| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,724,172 – 8,724,273 |
| Length | 101 |
| Max. P | 0.740891 |
| Location | 8,724,172 – 8,724,273 |
|---|---|
| Length | 101 |
| Sequences | 12 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 93.69 |
| Shannon entropy | 0.12786 |
| G+C content | 0.29613 |
| Mean single sequence MFE | -20.02 |
| Consensus MFE | -16.03 |
| Energy contribution | -16.03 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.740891 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8724172 101 + 27905053 GGCACACGAAAA--UUUUUAACUUAAAUUACUUUUCGUAAUAACUUUAUUUUGUAAUUUACGUAAGUAGAAGUAA------CAUUUAUGCAGCUGCAUAAACCGCCAAC---------- (((.........--......((((...((((((..(((((..((........))...))))).))))))))))..------..(((((((....)))))))..)))...---------- ( -21.00, z-score = -2.69, R) >dp4.chr2 19334150 101 - 30794189 GGCACACGAAAA--UUUUUAACUUAAAUUACUUUUCGUAAUAACUUUAUUUUGUAAUUUACGUAAGUAGAAGUAA------CAUUUAUGCAGCUGCAUAAACCGCCAGC---------- (((.........--......((((...((((((..(((((..((........))...))))).))))))))))..------..(((((((....)))))))..)))...---------- ( -21.00, z-score = -2.38, R) >droPer1.super_0 9058813 101 + 11822988 GGCACACGAAAA--UUUUUAACUUAAAUUACUUUUCGUAAUAACUUUAUUUUGUAAUUUACGUAAGUAGAAGUAA------CAUUUAUGCAGCUGCAUAAACCGCCAGC---------- (((.........--......((((...((((((..(((((..((........))...))))).))))))))))..------..(((((((....)))))))..)))...---------- ( -21.00, z-score = -2.38, R) >droAna3.scaffold_13340 14255462 101 - 23697760 GGCACACGAAAA--UUUUUAACUUAAAUUACUUUUCGUAAUAACUUUAUUUUGUAAUUUACGUAAGUAGAAGUAA------CAUUUAUGCAGCUGCAUAAACUGCCAAC---------- ((((........--......((((...((((((..(((((..((........))...))))).))))))))))..------..(((((((....))))))).))))...---------- ( -21.20, z-score = -2.59, R) >droEre2.scaffold_4770 4824517 101 - 17746568 GGCACACGAAAA--UUUUUAACUUAAAUUACUUUUCGUAAUAACUUUAUUUUGUAAUUUACGUAAGUAGAAGUAA------CAUUUAUGCAGCUGCAUAAACCGCCAAC---------- (((.........--......((((...((((((..(((((..((........))...))))).))))))))))..------..(((((((....)))))))..)))...---------- ( -21.00, z-score = -2.69, R) >droYak2.chr3R 13020219 101 + 28832112 GGCACACGAAAA--UUUUUAACUUAAAUUACUUUUCGUAAUAACUUUAUUUUGUAAUUUACGUAAGUAGAAGUAA------CAUUUAUGCAGCUGCAUAAACCGCCAAC---------- (((.........--......((((...((((((..(((((..((........))...))))).))))))))))..------..(((((((....)))))))..)))...---------- ( -21.00, z-score = -2.69, R) >droSec1.super_0 7855301 101 - 21120651 GGCACACGAAAA--UUUUUAACUUAAAUUACUUUUCGUAAUAACUUUAUUUUGUAAUUUACGUAAGUAGAAGUAA------CAUUUAUGCAGCUGCAUAAACCGCCAAC---------- (((.........--......((((...((((((..(((((..((........))...))))).))))))))))..------..(((((((....)))))))..)))...---------- ( -21.00, z-score = -2.69, R) >droSim1.chr3R 14824915 101 - 27517382 GGCACACGAAAA--UUUUUAACUUAAAUUACUUUUCGUAAUAACUUUAUUUUGUAAUUUACGUAAGUAGAAGUAA------CAUUUAUGCAGCUGCAUAAACCGCCAAC---------- (((.........--......((((...((((((..(((((..((........))...))))).))))))))))..------..(((((((....)))))))..)))...---------- ( -21.00, z-score = -2.69, R) >droWil1.scaffold_181089 11456150 118 + 12369635 GGCAUACGAAAAA-UUUUUAACUUAAAUUACUUUUCGUAAUAACUUUAUUUUGUAAUUUACGUAAGUAGAAGUAAAAGUAACAUUUAUGCAGCUGCAUAAAAAGCCACGCCAAAAAAAA (((.(((((((((-(((.......))))...))))))))......(((((((....(((((....)))))....)))))))..(((((((....))))))).......)))........ ( -24.70, z-score = -2.67, R) >droVir3.scaffold_12855 6055342 101 - 10161210 GGCGCACAAAAA--UUUUUAACUUAAAUUACUUUUCGUAAUAACUUUAUUUUGUAAUUUACGUAAGUAGAAGUAA------CAUUUAUGCAGCUGCAUAAACCUCCAGC---------- ((.(........--......((((...((((((..(((((..((........))...))))).))))))))))..------..(((((((....))))))).).))...---------- ( -16.30, z-score = -0.61, R) >droMoj3.scaffold_6540 25717534 101 - 34148556 GGCGUACACAAA--UUUUUAACUUAAAUUACUUUUCGUAAUAACUUUAUUUUGUAAUUUACGUAAGUAGAAGUAA------CAUUUAUGCAGCUGCAUAAACCUCCAGC---------- ((.(........--......((((...((((((..(((((..((........))...))))).))))))))))..------..(((((((....))))))).).))...---------- ( -16.50, z-score = -0.87, R) >droGri2.scaffold_14906 7454973 103 - 14172833 GGCGCACACAAAAUUUUUUAACUUAAAUUACUUUUCGUAAUAACUUUAUUUUGUAAUUUACGUAAGUAGAAGUAA------CAUUUUUGCAGCUGCAUGAACCUCCAGC---------- ((..((..............((.((((((((.....((((.....))))...)))))))).))..((((..((((------.....))))..)))).))..))......---------- ( -14.50, z-score = 0.07, R) >consensus GGCACACGAAAA__UUUUUAACUUAAAUUACUUUUCGUAAUAACUUUAUUUUGUAAUUUACGUAAGUAGAAGUAA______CAUUUAUGCAGCUGCAUAAACCGCCAAC__________ ((..................((((...((((((..(((((..((........))...))))).))))))))))..........(((((((....)))))))...))............. (-16.03 = -16.03 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:10:29 2011