| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,718,331 – 8,718,449 |
| Length | 118 |
| Max. P | 0.605083 |
| Location | 8,718,331 – 8,718,449 |
|---|---|
| Length | 118 |
| Sequences | 12 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 64.01 |
| Shannon entropy | 0.82105 |
| G+C content | 0.42639 |
| Mean single sequence MFE | -38.36 |
| Consensus MFE | -0.73 |
| Energy contribution | -1.68 |
| Covariance contribution | 0.95 |
| Combinations/Pair | 1.56 |
| Mean z-score | -3.02 |
| Structure conservation index | 0.02 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.605083 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8718331 118 + 27905053 UUGCCCAAUUAGGACAUGGUCGAUUUUCUACUCCUCAAAUUUGAUGAAGACCAAGACGGCUACAUCUCAUUUGAGGAGUAUAGAUCGAUCGUGUUGCAGCAGCCGCGUCUGCUGGAGU ............((((((((((((((..((((((((((((..((((.((.((.....)))).))))..)))))))))))).)))))))))))))).((((((......)))))).... ( -52.30, z-score = -6.30, R) >droSim1.chr3R 14818794 118 - 27517382 UUGCCCAUCUAGGACAUGGUCGAUUUUCUACUCCUCAAAUUUGAUGAAGACCAAGACGGCUACAUCUCAUUUGAGGAGUAUAGAUCGAUCGUGUUGCAGCAGCCGCGUCUGCUGGAGU ............((((((((((((((..((((((((((((..((((.((.((.....)))).))))..)))))))))))).)))))))))))))).((((((......)))))).... ( -52.30, z-score = -5.97, R) >droSec1.super_0 7849240 118 - 21120651 UUGCCCAUCUAGGACAUGGUCGAUUUUCUACUCCUCAAAUUUGAUGAAGACCAAGACGGCUACAUCUCAUUUGAGGAGUAUAGAUCGAUCGUGUUGCAGCAGCCGCGUCUGCUGGAGU ............((((((((((((((..((((((((((((..((((.((.((.....)))).))))..)))))))))))).)))))))))))))).((((((......)))))).... ( -52.30, z-score = -5.97, R) >droYak2.chr3R 13014056 118 + 28832112 UUCCCCAUUUAGGACAUGGUCGAUUUUCUACUCCUCAAAUUUGAUGAAGACCAGGAUGGCUACAUCUCAUUUGAGGAGUACAGAUCGAUCGUGUUGCAGCAGCCGAGUCUGCUGGAGU ............((((((((((((((..((((((((((((..((((.((.((.....)))).))))..)))))))))))).)))))))))))))).((((((......)))))).... ( -52.40, z-score = -5.97, R) >droEre2.scaffold_4770 4818429 118 - 17746568 UUGUUCAUUUAGGACAUGGUCGAUUUUCUACUCCUCAAAUUUGAUGAAGACCAGGAUGGCUACAUCUCAUUUGAGGAGUACAGAUCGAUCGUGUUGCAUCAGCCAAGUCUGCUGGAGU ............((((((((((((((..((((((((((((..((((.((.((.....)))).))))..)))))))))))).))))))))))))))((..((((.......))))..)) ( -49.20, z-score = -5.41, R) >droAna3.scaffold_13340 14251418 116 - 23697760 --UGAAAUUUAGGAUAUGGUCGAUUUUCUACUCCUUAAAUUUGAUGAUGACCAGGAUGGCAUAAUCACAUAUGAGGAGUACAGCAGAGUCGUCCGUAACCAGCCGGGCCUGCUUGAAU --.........((.(((((.(((((((((((((((((.((.((((.(((.((.....))))).)))).)).))))))))..)).))))))).))))).))...((((....))))... ( -38.30, z-score = -3.24, R) >dp4.chr2 19920615 116 + 30794189 --UUUCCAUCAGGACAUGGGUGAGUUCCUCAUCAAGAAGUUUGAUGUCGACAAGGAUGGUUUUAUCUCUUAUGAGGACUACUCCACUGUGGUCUCCGAGCAGCCGUGUCUGCUCGAGU --..(((....)))(((((..(((((((((((.((((..(..((((((......))).)))..)..)))))))))))..))))..))))).....(((((((......)))))))... ( -36.00, z-score = -0.56, R) >droPer1.super_3 2666867 116 + 7375914 --UUUCCAUCAGGACAUGGGUGAGUUCCUCAUCAAGAAGUUUGAUGUCGACAAGGAUGGUUUUAUCUCUUAUGAGGACUACUCCACUGUGGUCUCCGAGCAGCCGUGUCUGCUCGAGU --..(((....)))(((((..(((((((((((.((((..(..((((((......))).)))..)..)))))))))))..))))..))))).....(((((((......)))))))... ( -36.00, z-score = -0.56, R) >droWil1.scaffold_181089 11682201 117 - 12369635 -UUUCCUAUUAGGAUAUGUGUGAGUUUAUCAUCAGAAAAUUCGAUGUAGACAAAGAUGGACUCAUUUCAUAUGAAGAUUAUUCUGCUGUUGUAUCGGAACAGCCUUGCCUAUUGGAGU -.((((...(((((((((.(((((((((((....((....))..((....))..)))))))))))..)))))..(((....)))((((((.......))))))....))))..)))). ( -30.80, z-score = -1.75, R) >droVir3.scaffold_12875 5956401 117 - 20611582 -UCGGCCAACAGGAUAUGCUUGAAGUGCUAUUUGCUAAAUUUGAUAUCGACAAGGACAUGCACAUCUCGUUUGAAGAAUAUUGCGAGGUUGUGCGCAUGCAGCCGCAUCUUAUGGAAU -.((((...((((.....))))...(((....(((.....(((....))).........(((((((((((............)))))).)))))))).)))))))............. ( -27.40, z-score = 0.96, R) >droMoj3.scaffold_6540 25706977 93 - 34148556 ---UCGCCUUAGAAUAUAAUCAAAUGGCAAACCC---AAUUAAAAUACGAACUGAAAAUCCAUUUUAAUUAUGAGUCAGUCUAUGAAUUCAACAUUUAC------------------- ---..(((((.((......)).)).)))......---(((((((((..((........)).))))))))).(((((((.....)).)))))........------------------- ( -10.00, z-score = -0.52, R) >droGri2.scaffold_14830 4746330 112 - 6267026 ------UUGUAGGAUAUGACCGAAUUUAUAUUCACCAAAUUUGAUUUGGACAAAGAUGGCGUUAUCUCUUAUGAAGAAUAUUAUGAGGUUGUUAUUAAUCAGCCUGCACUUUUGGAAU ------.((((((...((((((((((...(((.....)))..))))))).....(((((((....(.(((((((......)))))))).)))))))..))).)))))).......... ( -23.30, z-score = -0.95, R) >consensus _UGUCCAUUUAGGACAUGGUCGAUUUUCUACUCCUCAAAUUUGAUGAAGACCAGGAUGGCUACAUCUCAUAUGAGGAGUACAGAUCGGUCGUGUUGCAGCAGCCGCGUCUGCUGGAGU ........................................................((((....((((....))))..............(........).))))............. ( -0.73 = -1.68 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:10:28 2011