| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,694,778 – 8,694,847 |
| Length | 69 |
| Max. P | 0.868617 |
| Location | 8,694,778 – 8,694,847 |
|---|---|
| Length | 69 |
| Sequences | 6 |
| Columns | 70 |
| Reading direction | forward |
| Mean pairwise identity | 75.52 |
| Shannon entropy | 0.47647 |
| G+C content | 0.48537 |
| Mean single sequence MFE | -16.48 |
| Consensus MFE | -11.73 |
| Energy contribution | -11.70 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.99 |
| SVM RNA-class probability | 0.868617 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8694778 69 + 27905053 ACUAGUGUACUCAAUACAGCCCAUCCGUCUGGGUUGCAGUCCUUUCAA-UCCAUUCAUUGGCAGCAGGCA ................(((((((......)))))))..(((((.((((-(......))))).))..))). ( -13.50, z-score = 0.18, R) >droAna3.scaffold_13340 14228097 55 - 23697760 -----------CGAUCGAACCCAUCCGCUUGGGAAUCGGCUCAGUUGUAUUCAUUUGCUAUCCAGA---- -----------.((((((.((((......))))..)))).))....(((......)))........---- ( -9.90, z-score = 0.53, R) >droSec1.super_0 7825591 70 - 21120651 ACUAGUGUAGUCAAUGCAACCCAUCCGUCUGGGUUGCAGUCUUUUCAAAUCCAUUCAUUGGCAGCAGGCA .....(((.((((((((((((((......)))))))).(......)..........)))))).))).... ( -19.90, z-score = -2.26, R) >droSim1.chr3R 14794860 70 - 27517382 ACUAGUGUAGUCAAUGCAACCCAUCCGUCUGGGUUGCAGUCUUUUCAAAUCCAUUCAUUGGCAGCAGGCA .....(((.((((((((((((((......)))))))).(......)..........)))))).))).... ( -19.90, z-score = -2.26, R) >droYak2.chr3R 12988588 70 + 28832112 ACUAGUGUACUCAAUGCAGCCCAUCCGUCAGGGCUGCAGUCUUUUCAAAUCCAUUCAUUGGCAGCAGGCA ..............((((((((........))))))))((((........(((.....)))....)))). ( -19.70, z-score = -1.66, R) >droEre2.scaffold_4770 4792624 70 - 17746568 ACUAGUGUUCUCAAUGCAGCCCAUCCGUCAGGGUUGCAGUCUUUUCAAAUCCAUUCAUUGGCAGCCAGCA .((((((.......((((((((........))))))))(......).........))))))......... ( -16.00, z-score = -1.35, R) >consensus ACUAGUGUACUCAAUGCAACCCAUCCGUCUGGGUUGCAGUCUUUUCAAAUCCAUUCAUUGGCAGCAGGCA ..............((((((((........))))))))................................ (-11.73 = -11.70 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:10:26 2011