| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,685,227 – 8,685,321 |
| Length | 94 |
| Max. P | 0.889537 |
| Location | 8,685,227 – 8,685,321 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 65.88 |
| Shannon entropy | 0.62119 |
| G+C content | 0.34870 |
| Mean single sequence MFE | -19.29 |
| Consensus MFE | -6.35 |
| Energy contribution | -7.93 |
| Covariance contribution | 1.59 |
| Combinations/Pair | 1.37 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.33 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.09 |
| SVM RNA-class probability | 0.889537 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8685227 94 + 27905053 -AAGAGUAGUUUUCUUAACAGAA-AUCUAUUUUCGAUAAGCUUUUACUAAGAGUAACAACUUUUCCCCUGUCCACGCUUUUGAGAAAGCUUUUCAG---------- -.(((((((.(((((....))))-).))))))).((.((((((((..(((((((....((.........))....))))))).)))))))).))..---------- ( -20.30, z-score = -2.32, R) >droEre2.scaffold_4770 4783354 94 - 17746568 CAAAUUUAUUUUCGCAAGUAGAA-AUCUAUUUUUGAUAAGCUUUUCCUAAAGGUAACAACUUUUC-CCUGUCCGUGCUCCUAAGAAAGCUUUUCAG---------- ...............((((((..-..)))))).(((.((((((((..((..((((...((.....-...))...))))..)).)))))))).))).---------- ( -15.60, z-score = -1.36, R) >droYak2.chr3R 12979369 95 + 28832112 AAAAUGAAUUUUCACUAGUGGAA-AUCUAUUUUUGAUAAGCUUUUACUAAGAGUACCAACUUUUCUCCUGUCCGUGCUCUUGAGAAAGCUUUUCAG---------- ((((((.(((((((....)))))-)).))))))(((.((((((((..(((((((((..((.........))..))))))))).)))))))).))).---------- ( -28.00, z-score = -4.54, R) >droSec1.super_0 7816523 94 - 21120651 -AAAAGGAGUUUUCUUAUCAGAA-AUCUAUUUUCGUUAAGCUUUUAUUAAGAGUCACAACUUUUCCCCUGUCCCCGCUUUUGAGAAAGCUCUUCAG---------- -...(((((((((((((...(((-(.....))))(((..(((((.....)))))...)))....................)))))))))))))...---------- ( -18.20, z-score = -1.67, R) >droSim1.chr3R 14785705 90 - 27517382 -CAGAGUAGUUU----AGCAGAA-AUCUAUUUUCGAUAAGCUUUUACUAAGAGUCACAACUUUUCCCAUGUCCCCGCUUUUGAAAAAGCUUUUCAG---------- -.((((((((((----.....))-).))))))).((.((((((((..(((((((....((.........))....))))))).)))))))).))..---------- ( -15.30, z-score = -1.30, R) >droGri2.scaffold_15074 474573 104 - 7742996 --AGAAUACUGAGACAUGCUGAGCAUCCAUUUGGGCCAAGUUGAAAUAAUAAAUAAAUACAGCCCAGAUGUAAGCAAUGCAGAUAGAUAAAAGAAAAAUAGCUAAG --......(((.....((((..(((((....(((((...(((.............)))...)))))))))).))))...)))........................ ( -18.32, z-score = -1.55, R) >consensus _AAAAGUAGUUUCACUAGCAGAA_AUCUAUUUUCGAUAAGCUUUUACUAAGAGUAACAACUUUUCCCCUGUCCGCGCUUUUGAGAAAGCUUUUCAG__________ ..................................((.((((((((..(((((((....((.........))....))))))).)))))))).))............ ( -6.35 = -7.93 + 1.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:10:25 2011