| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,674,119 – 8,674,210 |
| Length | 91 |
| Max. P | 0.767663 |
| Location | 8,674,119 – 8,674,210 |
|---|---|
| Length | 91 |
| Sequences | 11 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 67.52 |
| Shannon entropy | 0.62886 |
| G+C content | 0.56036 |
| Mean single sequence MFE | -32.79 |
| Consensus MFE | -14.26 |
| Energy contribution | -14.32 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.68 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.767663 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8674119 91 + 27905053 ---AAAGUAUCUCCGCGCGGCUUCAGGCUUACGAACUGACUGAAGCUGCGA-CUCGGAUU-CGUGAGUUCAACUUCAC--GGAUGC--CACUGCUGUCGG------------ ---...((((((((((((((((((((.............))))))))))).-..))))..-((((((......)))))--))))))--............------------ ( -33.62, z-score = -2.48, R) >droAna3.scaffold_13340 14208497 92 - 23697760 ---AAAGUAUCUCCGCGCGGCUUCAGGCUUACGAGCUGACUGAAGCUGCGAAUUCGAAAU-CGGGAGUUCCAUUUCGC--AGAUGC--CAUCGCUUUUGG------------ ---...((((((.(.((((((((((((((....)))...))))))))))).....(((((-.((.....)))))))).--))))))--............------------ ( -31.70, z-score = -1.35, R) >droEre2.scaffold_4770 4771717 91 - 17746568 ---AAAGUAUCUCCGCGCGGCUUCAGGCUUACGAGCUGACUGAAGCUGCGA-CUCGGAUU-CGUGAGUUCAACUUCAC--GGAUGC--CACUGCAGUCGG------------ ---...(((((((((((((((((((((((....)))...))))))))))).-..))))..-((((((......)))))--))))))--............------------ ( -35.20, z-score = -2.18, R) >droYak2.chr3R 12967894 91 + 28832112 ---AAAGUAUCUCCGCGCGGCUUCAGGCUUACGAGCUGACUGAAGCUGCGA-CUCGGAUU-CGUGAGUUGAACUUUAC--GGAUGC--CACCGCAGUCGG------------ ---.........((..(((((((((((((....)))...))))))))))((-((((((((-((((((......)))))--))))..--..))).))))))------------ ( -35.10, z-score = -2.15, R) >droSec1.super_0 7805440 91 - 21120651 ---AAAGUAUCUCCGCGCGGCUUCAGGCUUACGAACUGACUGAAGAUGCGA-CUCGGAUU-CGUGAGUUCAACUUCAC--GGAUGC--CACCGCUGUCGG------------ ---.........((((((((((((((.............))))))......-...(((((-((((((......)))))--)))).)--).)))).).)))------------ ( -28.32, z-score = -0.77, R) >droSim1.chr3R 14774665 91 - 27517382 ---AAAGUAUCUCCGCGCGGCUUCAGGCUUACGAACUGACUGAAGCUGCGA-CUCGGAUU-CGUGAGUUCAACUUCAC--GGAUGC--CACCGCUGUCGG------------ ---...((((((((((((((((((((.............))))))))))).-..))))..-((((((......)))))--))))))--..(((....)))------------ ( -34.72, z-score = -2.63, R) >droWil1.scaffold_181089 11393178 108 + 12369635 ---AAAAUGAUUCCACGCGGUUUCAAGCUUACGAACUGACUGAAACUGAAG-CUGCAAAUACUCGAGAUGCGGCCCAACGAAGUUCGUUAUCAUACUCGUCGGUUGGUCUCC ---....(((..((....))..))).....((.(((((((.((...(((.(-(((((...........))))))..((((.....)))).)))...))))))))).)).... ( -26.20, z-score = -0.43, R) >droPer1.super_0 9006599 102 + 11822988 ---AGGGUAUCUCCGCGCGGCUUCAGGCUUCCGAACUAACUGAAGCUGCGAGCACGCGAUGUGCGGCCCACAGUCCUC--GGGAGCAUCAGCAUCGUCAUCGUUCAG----- ---.(((....)))..((((((((((.............))))))))))((((..(((((((((..(((.........--))).))....)))))))....))))..----- ( -36.32, z-score = -0.60, R) >dp4.chr2 19281909 102 - 30794189 ---AGGGUAUCUCCGCGCGGCUUCAGGCUUCCGAACUAACUGAAGCUGCGAGCACGCGAUGUGCGGCCCACAGUCCUC--GGGAGCAUCAGCAUCGUCAUCGUUCAG----- ---.(((....)))..((((((((((.............))))))))))((((..(((((((((..(((.........--))).))....)))))))....))))..----- ( -36.32, z-score = -0.60, R) >droMoj3.scaffold_6540 25640331 94 - 34148556 ---AAAGCAUCUCCGCGCGGCUUCGAGUUUACGAACUGACUGAAGCUGCGG--CAGCGCC-AGCAGCGCGAGGCACAC--GUCUGCU-CAUCGGCCGCUGCUU--------- ---...((......))((((((((.((((........))))))))))))((--(((((((-(((((((.(.....).)--).)))))-....)).))))))).--------- ( -40.00, z-score = -0.96, R) >droGri2.scaffold_14906 7402959 97 - 14172833 CGAAAAGUAUCUCCGCACGGCUUCAAGUUUACGAACAGACUGAAGCUGCAG--CCGCAGC-AGCAGCGCAAGAUUCAC--AACUCCU-CAUCGGCCUCAUCGG--------- (((...(.((((..((.((((((((.((((......))))))))))))..(--(.((...-.)).)))).)))).)..--....((.-....)).....))).--------- ( -23.20, z-score = -0.00, R) >consensus ___AAAGUAUCUCCGCGCGGCUUCAGGCUUACGAACUGACUGAAGCUGCGA_CUCGGAUU_CGCGAGUUCAACUUCAC__GGAUGC__CACCGCCGUCGG____________ ......((((((...((((((((((...............))))))))))..............(((.....))).....)))))).......................... (-14.26 = -14.32 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:10:24 2011