| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,661,620 – 8,661,713 |
| Length | 93 |
| Max. P | 0.989450 |
| Location | 8,661,620 – 8,661,713 |
|---|---|
| Length | 93 |
| Sequences | 7 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 69.41 |
| Shannon entropy | 0.60305 |
| G+C content | 0.49434 |
| Mean single sequence MFE | -14.12 |
| Consensus MFE | -9.45 |
| Energy contribution | -9.58 |
| Covariance contribution | 0.13 |
| Combinations/Pair | 1.57 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.37 |
| SVM RNA-class probability | 0.989450 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8661620 93 + 27905053 UAUUAUUUCCAUGGCUCAUUCUCAAC--GUCCCGGUUGUCUGAAACCAGAUUCCUGUGACCGC-CCCACCACGCCUUUCCCCUCUCGCUUUUCACU------- ............(((...........--(((.(((..(((((....)))))..))).)))...-........))).....................------- ( -16.05, z-score = -2.03, R) >droSim1.chr3R 14761909 94 - 27517382 UAUUAUUUCCAUGGCUCAUUCUCAAC--GUCCCGGUUGUCUGAAACCAGAUUCCUGUGACCGCCCCCACCAUGCCUUUCCCCUCUCGCUUUUCACU------- ............(((...........--(((.(((..(((((....)))))..))).)))............))).....................------- ( -16.20, z-score = -2.06, R) >droSec1.super_0 7792833 94 - 21120651 UAUUAUUUCCAUGGCUCAUUCUCAAC--GUCCCGGUUGUCUGAAACCAGAUUCCUGUGACCACACCCACCACGCCUUUCCCCUCUCGCUUUUCACU------- ............(((...........--(((.(((..(((((....)))))..))).)))............))).....................------- ( -15.50, z-score = -1.99, R) >droYak2.chr3R 12955147 94 + 28832112 UAUUAUUUCCAUGGCUCAUUCUCAAC--GUCCCGGUUGUCUGAAACCAGAUUCCUGUGACCACCCCCACCAUGCCUUUCCCCUCUCGCUUUUCACU------- ............(((...........--(((.(((..(((((....)))))..))).)))............))).....................------- ( -16.20, z-score = -2.34, R) >droEre2.scaffold_4770 4759148 93 - 17746568 UAUUACUUCCAUGGCUUAUUCUCAAC--GUCCCGGUUGUCUGAAACCAGAUUCCUGUGACCAC-CCCACCACGCCUUUUGCCUCUCGCCUUUCACU------- ............(((...........--(((.(((..(((((....)))))..))).)))...-........((.....)).....))).......------- ( -17.10, z-score = -2.43, R) >droPer1.super_0 2828194 76 - 11822988 UAUUAUUUCCAUGGCUCAUUCUCAUCCCAUUCUCGUUGUCUGUAACCAGAUUCCGGCUUCCUCCCCUGCUUUCUCC--------------------------- ..........((((............))))..(((..(((((....)))))..)))....................--------------------------- ( -7.80, z-score = -0.72, R) >droWil1.scaffold_181089 11379704 99 + 12369635 UAUUAUUUCCAAAGGUUCCUUGUGCU----CCUCGUUGUCCUCAUUGUCGUUGCCAUUGCCGUUGUCUCAGCUAUUGCCGGUAACCAGAUUCCACUAUGUUCU .............((((((..(.((.----....((((....((.((.((.......)).)).))...))))....))))).))))................. ( -10.00, z-score = 1.60, R) >consensus UAUUAUUUCCAUGGCUCAUUCUCAAC__GUCCCGGUUGUCUGAAACCAGAUUCCUGUGACCACCCCCACCACGCCUUUCCCCUCUCGCUUUUCACU_______ ............(((.............(((.(((..(((((....)))))..))).)))............)))............................ ( -9.45 = -9.58 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:10:19 2011