| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,660,865 – 8,660,955 |
| Length | 90 |
| Max. P | 0.656674 |
| Location | 8,660,865 – 8,660,955 |
|---|---|
| Length | 90 |
| Sequences | 9 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 89.28 |
| Shannon entropy | 0.20105 |
| G+C content | 0.34640 |
| Mean single sequence MFE | -19.49 |
| Consensus MFE | -14.10 |
| Energy contribution | -13.91 |
| Covariance contribution | -0.18 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.656674 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8660865 90 + 27905053 UGUGCACUUAACACUUUGCACACGCAC--ACAAACAAGUGUCGCAUAAAGUUAACUGCGCAUAGAAAAAUGGAAAUUUUUAUUAGAUUUCGA-------- ((((((.(((((....(((((((....--........)))).)))....))))).))))))..........(((((((.....)))))))..-------- ( -22.80, z-score = -2.76, R) >droSec1.super_0 7792094 90 - 21120651 UGUGCACUUAACACUUUGCACACGCAC--ACAAACAAGUGUCGCAUAAAGUUAACUGCGCAUAGAAAAAUGGAAAUUUUUAUUACAUUUCGA-------- ((((((.(((((....(((((((....--........)))).)))....))))).))))))...((((((....))))))............-------- ( -21.30, z-score = -2.37, R) >droYak2.chr3R 12954326 90 + 28832112 UGUGCACUUAACACUUUGCACACGCAC--ACAAACAAGUGUCGCAUAAAGUUAACUGCGCAUAGAAAAAUGGAAAUUUUUAUUAGAUUUCGA-------- ((((((.(((((....(((((((....--........)))).)))....))))).))))))..........(((((((.....)))))))..-------- ( -22.80, z-score = -2.76, R) >droEre2.scaffold_4770 4758368 90 - 17746568 UCUGCACUUAACACUUUGCACACGCAC--ACAAACAAGUGUCGCAUAAAGUUAAAUGCGCAUAGAAAAAUGGAAAUUUUUAUUAGAUUUCGA-------- ...(((.(((((....(((((((....--........)))).)))....))))).))).............(((((((.....)))))))..-------- ( -18.40, z-score = -1.75, R) >droAna3.scaffold_13340 14196018 92 - 23697760 UCUGCACUUAACACUUUGAACACGCACCGACAGACAAGUGUCGCAUAAAGUUAACUGCGCAUAGAAAAAUGGAAAUUUUUAUUAGAUUUCGA-------- ...(((.(((((....((......)).(((((......)))))......))))).))).............(((((((.....)))))))..-------- ( -15.00, z-score = -0.22, R) >droWil1.scaffold_181089 11379297 92 + 12369635 CGUGCACUUAACACUUUGCACACGCAU--------AAAUGUCGCAUAAAGUUAACUGCGCAUAGAAAAAUGGAAAUUUUUAUUAGAUUUCGAAAAUGUUG .(((((.(((((....((((((.....--------...))).)))....))))).)))))...........(((((((.....))))))).......... ( -19.40, z-score = -1.40, R) >droVir3.scaffold_12855 5979144 84 - 10161210 UACGCACUUAACACUUUGUACACGCAU--------AAAUGUCGCAUAAAGUUAACUGCGCAUAGAAGAAUGGAAAUUUUUAUUAGAUUUCGA-------- ..((((.(((((....((((((.....--------...))).)))....))))).))))............(((((((.....)))))))..-------- ( -14.80, z-score = -0.92, R) >droMoj3.scaffold_6540 25622384 84 - 34148556 UACGCACUUAACACUUUGCACACGCAU--------AAAUGUCGCAUAAAGUUAACUGCGCAUAGAAAUAUGGAAAUUUUUAUUAGAUUUCGA-------- ..((((.(((((....((((((.....--------...))).)))....))))).))))((((....))))(((((((.....)))))))..-------- ( -20.30, z-score = -3.24, R) >droGri2.scaffold_14906 7390328 84 - 14172833 UACGCACUUAACACUUUGCACACGCAA--------AAGUGUCGCAUAAAGUUAACUGUGCAUAGAAAAAUGGAAAUUUUUAUUAGAUUUCGA-------- ...(((((((((....(((((((....--------..)))).)))....)))))..))))...........(((((((.....)))))))..-------- ( -20.60, z-score = -2.81, R) >consensus UGUGCACUUAACACUUUGCACACGCAC__ACA_ACAAGUGUCGCAUAAAGUUAACUGCGCAUAGAAAAAUGGAAAUUUUUAUUAGAUUUCGA________ ..((((.(((((....((((((................))).)))....))))).))))............(((((((.....))))))).......... (-14.10 = -13.91 + -0.18)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:10:19 2011