| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,654,887 – 8,654,963 |
| Length | 76 |
| Max. P | 0.631725 |
| Location | 8,654,887 – 8,654,963 |
|---|---|
| Length | 76 |
| Sequences | 10 |
| Columns | 84 |
| Reading direction | forward |
| Mean pairwise identity | 77.11 |
| Shannon entropy | 0.49681 |
| G+C content | 0.46329 |
| Mean single sequence MFE | -20.26 |
| Consensus MFE | -11.32 |
| Energy contribution | -11.33 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.631725 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8654887 76 + 27905053 CAGUGCAGACAUCAAUUGUCCAUAAGAAAAGGUUGCGUAUACGCAGCGUUGUCCAGUU---GCUAA----CAUUGAGUGCACA- ..(((((((((.....)))).....((.((.((((((....)))))).)).)).....---.....----.......))))).- ( -21.70, z-score = -1.68, R) >droSim1.chr3R 14754995 76 - 27517382 CAGUGCAGACAUCAAUUGUCCAUAAGAAAAGGUUGCGUAUACGCAGCGUUGUCCAGUU---GCUAA----CAUUGAGUGCACA- ..(((((((((.....)))).....((.((.((((((....)))))).)).)).....---.....----.......))))).- ( -21.70, z-score = -1.68, R) >droSec1.super_0 7786087 76 - 21120651 CAGUGCAGACAUCAAUUGUCCAUAAGAAAAGGUUGCGUAUACGCAGCGUUGUCCAGUU---GCUAA----CAUUGAGUGCACA- ..(((((((((.....)))).....((.((.((((((....)))))).)).)).....---.....----.......))))).- ( -21.70, z-score = -1.68, R) >droYak2.chr3R 12948016 76 + 28832112 CAGUGCAGACAUCAAUUGUCCAUAAGAAAAGGUUGCGUAUACGCAGCGUUGUCCAGUU---GCUAA----CAUUGAGUGCACA- ..(((((((((.....)))).....((.((.((((((....)))))).)).)).....---.....----.......))))).- ( -21.70, z-score = -1.68, R) >droEre2.scaffold_4770 4752201 76 - 17746568 CAGUGCAGACAUCAAUUGUCCAUAAGAAAAGGUUGCGUAUACGCAGCGUUGUCCAGUU---GCUAA----CAUCGAGUGCACA- ..(((((((((.....)))).....((.((.((((((....)))))).)).)).....---.....----.......))))).- ( -21.70, z-score = -1.86, R) >dp4.chr2 19261161 83 - 30794189 CAGCAGAGACAUCAAUUGUCCAUAAGAAAAGGUUGCGUAUACGCAGCGUUGUCCAGCUCUGGCCGGGCCCCAUUGAGUGCACA- ..((((.((((.....))))).......((.((((((....)))))).))((((.((....)).)))).........)))...- ( -23.50, z-score = -0.55, R) >droPer1.super_0 8985884 82 + 11822988 CAGCAGAGACAUCAAUUGUCCAUAAGAAAAGGUUGCGUAUACGCAGCGCUGUCCAGCUCUGGUCCGGCC-CAUUGAGUGCACA- ((((.(.((((.....)))))..........((((((....))))))))))....(((((((......)-))..)))).....- ( -23.40, z-score = -0.77, R) >droWil1.scaffold_181089 11373206 71 + 12369635 CAACACAGACAUCAAUUGUCCAUAAGAAAAGGUUGCGUAUACGCAGU-CUCUGACUUCAACUCUGACUCUCG------------ .....((((........(((....(((...(..((((....))))..-)))))))......)))).......------------ ( -11.94, z-score = -0.47, R) >droMoj3.scaffold_6540 25615895 79 - 34148556 CAACAGAGACAUCAAUUGUCCAUAAGAAAAGGUUGCGUAUACGCAGCAUUGUACGCUGGCUAAAGG-----AAAGGGCCUGAAA ..((((.((((.....))))...........((((((....)))))).)))).....((((.....-----....))))..... ( -17.80, z-score = -0.74, R) >droGri2.scaffold_14906 7385489 78 - 14172833 AAACAGAGACAUCAAUUGUCCAUAAGAAAAGGUUGCGUAUACGCACCAUUGUGCGUUCUGUGCCAG-----AGACAUCGCAGA- .....(.((((.....))))).........(((.(((....)))))).(((((..(((((...)))-----))....))))).- ( -17.50, z-score = -0.61, R) >consensus CAGCACAGACAUCAAUUGUCCAUAAGAAAAGGUUGCGUAUACGCAGCGUUGUCCAGUU___GCUAA____CAUUGAGUGCACA_ .......((((.....))))...........((((((....))))))..................................... (-11.32 = -11.33 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:10:18 2011