| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,653,452 – 8,653,545 |
| Length | 93 |
| Max. P | 0.951293 |
| Location | 8,653,452 – 8,653,545 |
|---|---|
| Length | 93 |
| Sequences | 9 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 71.50 |
| Shannon entropy | 0.50455 |
| G+C content | 0.51764 |
| Mean single sequence MFE | -31.01 |
| Consensus MFE | -16.79 |
| Energy contribution | -16.94 |
| Covariance contribution | 0.15 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.57 |
| SVM RNA-class probability | 0.951293 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8653452 93 - 27905053 ACAAGCGCCUCCAUAAUACGCUUAUUUGUAACGCAUUGUGGGCGUGGUCAAAUGGGCGGCGUUGACGAAUAAGGGGG-GGUGGUUGAGUAACAC---------------------- .(((.(((((((......((((((((((..((((.......))))...)))))))))).((....)).......)))-)))).)))........---------------------- ( -35.30, z-score = -3.55, R) >droAna3.scaffold_13340 14188741 116 + 23697760 ACAAGCGGCCCCAUAAUACGCUUAUUUGUAACGCAUUGUGGGCGUGGUCAAAUGGGCGGUUCUACCGAUGCGAAUGGUGGCAAAUAAAAGGAAGGGAGUCAGGCUGGAAGUUACGC ...(((((((((......((((((((((..((((.......))))...))))))))))...((((((.......)))))).............))).)))..)))........... ( -33.50, z-score = -0.09, R) >droEre2.scaffold_4770 4750735 94 + 17746568 ACAAGCGCCUCCAUAAUACGCUUAUUUGUAACGCAUUGGGGGCGUGGCCAAAUGGGCGGCGUUGACGAAUAAGGGGGUGGUGGUUGAGUAACAA---------------------- .(((.((((.((......(.((((((((((((((.......))((.(((.....))).))))).))))))))).))).)))).)))........---------------------- ( -31.80, z-score = -1.53, R) >droYak2.chr3R 12946553 94 - 28832112 ACAAGCGCCUCCAUAAUACGCUUAUUUGUAACGCACUGUGGGCGUGGCCAAAUGGGCGGCGUUGACGAAUAAGGGGGUGGUGGUUGAGUAACAA---------------------- .(((.((((.((......(.(((((((((..(((...)))(((((.(((.....))).))))).))))))))).))).)))).)))........---------------------- ( -32.90, z-score = -1.50, R) >droSec1.super_0 7784676 93 + 21120651 ACAAGCGCCUCCAUAAUACGCUUAUUUGUAACGCAUUGUGGGCGUGGUCAAAUGGGCGGCGUUGACGAAUAAGGGGG-GGUGGUUGAGUAACAC---------------------- .(((.(((((((......((((((((((..((((.......))))...)))))))))).((....)).......)))-)))).)))........---------------------- ( -35.30, z-score = -3.55, R) >droSim1.chr3R 14753569 94 + 27517382 ACAGCCGCCUCCAUAAUACGCUUAUUUGUAACGCAUUGUGGGCGUGGUCAAAUGGGCGGCGUUGACGAAUAAGGGGGUGGUGGUUGAGUAACAC---------------------- .((((((((.((......((((((((((..((((.......))))...)))))))))).((....))........)).))))))))........---------------------- ( -36.50, z-score = -3.02, R) >droWil1.scaffold_181089 11371902 76 - 12369635 ACAAGCGGCUCCAUAAUACGCUUAUUUGUAACGCGUUGUGGGCGCGGCCAAGGGAGUGAUGUUUGCUCUCCUGUUC---------------------------------------- ....((.((((((((..(((((((....))).)))))))))).)).))((.(((((..(...)..))))).))...---------------------------------------- ( -24.20, z-score = -0.85, R) >dp4.chr2 19259427 72 + 30794189 ACAAGCGGCUCCAUAAUACGCUUAUUUGUAACGCAUUGUGGGCGUGGUC-AAUGGGCGGCUAUGCCAUUGCAG------------------------------------------- ...(((.((.((((..(((((((((.((.....))..)))))))))...-.)))))).))).(((....))).------------------------------------------- ( -24.80, z-score = -1.32, R) >droPer1.super_0 8984183 72 - 11822988 ACAAGCGGCUCCAUAAUACGCUUAUUUGUAACGCAUUGUGGGCGUGGUC-AAUGGGCGGCUAUGCCAUUGCAG------------------------------------------- ...(((.((.((((..(((((((((.((.....))..)))))))))...-.)))))).))).(((....))).------------------------------------------- ( -24.80, z-score = -1.32, R) >consensus ACAAGCGCCUCCAUAAUACGCUUAUUUGUAACGCAUUGUGGGCGUGGUCAAAUGGGCGGCGUUGACGAAUAAGGGGG_GGUGGUUGAGUAACA_______________________ ..................((((((((((..((((.......))))...)))))))))).......................................................... (-16.79 = -16.94 + 0.15)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:10:17 2011