| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,649,500 – 8,649,617 |
| Length | 117 |
| Max. P | 0.619316 |
| Location | 8,649,500 – 8,649,617 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 90.66 |
| Shannon entropy | 0.16828 |
| G+C content | 0.39655 |
| Mean single sequence MFE | -19.96 |
| Consensus MFE | -17.60 |
| Energy contribution | -17.80 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.619316 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8649500 117 - 27905053 UGCAUGGCAUACAAUUAAAAUUAAUUAUUUGCCAUUGUUGCGAACAGCGUUGACUAAUUGUUAACAAUUUUCUCCCCGCUCAAUUUUUGCAAUCGCCGCCCAAACUCCCAACCCCAC-- .((((((((...(((((....)))))...)))))).((((((((.((((..((..(((((....)))))...))..)))).....)))))))).)).....................-- ( -22.40, z-score = -2.30, R) >droSim1.chr3R 14749600 117 + 27517382 UGCAUGGCGUACAAUUAAAAUUAAUUAUUUGCCAUUGUUGCGAACAGCGUUGACUAAUUGUUAACAAUUUUCUCCCCGCUCAAUUUUUGCAAUCGCCGCCGAAACUCCCAAGCCCAC-- .((((((((...(((((....)))))...)))))).((.((((.....((((((.....))))))............((.........))..)))).))............))....-- ( -22.30, z-score = -1.08, R) >droSec1.super_0 7780702 117 + 21120651 UGCAUGGCAUACAAUUAAAAUUAAUUAUUUGCCAUUGUUGCGAAUAGCGUUGACUAAUUGUUAACAAUUUUCUCCCCACUCAAUUUUUGCAAUCGCCGCCGAAACUCCCAAACCCAC-- (((((((((...(((((....)))))...))))).....((.....))((((((.....))))))......................)))).(((....)))...............-- ( -18.90, z-score = -1.14, R) >droYak2.chr3R 12942594 119 - 28832112 UGCAUGGCAUACAAUUAAAAUUAAUUAUUUGCCAUUGUUGCGAGCAGCGUUGACUAAUUGUUAACAAUUUUCUCCCAGCUCAAUUUUUGCAAUCGCCACCCAAAAUCCAAUCUCCAAGC (((((((((...(((((....)))))...)))))..((((.(((....((((((.....))))))......))).))))........))))............................ ( -22.00, z-score = -1.32, R) >droEre2.scaffold_4770 4746772 110 + 17746568 UGCACGACAUACAAUUAAAAUUAAUUAUUUGCCAUUGUUGCGAGCACCGUUGACUAAUUGUUAACAAUUUUCUCCCAGCCCAAUUUUUGCAAUCGCCACCCAAACUCCCA--------- (((.((.((.(((((..((((.....))))...))))))))).)))..((((((.....)))))).......................((....))..............--------- ( -14.20, z-score = -0.89, R) >consensus UGCAUGGCAUACAAUUAAAAUUAAUUAUUUGCCAUUGUUGCGAACAGCGUUGACUAAUUGUUAACAAUUUUCUCCCCGCUCAAUUUUUGCAAUCGCCGCCCAAACUCCCAACCCCAC__ ...((((((...(((((....)))))...)))))).((.((((.....((((((.....))))))............((.........))..)))).)).................... (-17.60 = -17.80 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:10:14 2011