| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,647,406 – 8,647,521 |
| Length | 115 |
| Max. P | 0.892397 |
| Location | 8,647,406 – 8,647,521 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 121 |
| Reading direction | reverse |
| Mean pairwise identity | 65.58 |
| Shannon entropy | 0.65066 |
| G+C content | 0.37130 |
| Mean single sequence MFE | -27.20 |
| Consensus MFE | -8.56 |
| Energy contribution | -8.35 |
| Covariance contribution | -0.21 |
| Combinations/Pair | 1.72 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.11 |
| SVM RNA-class probability | 0.892397 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8647406 115 - 27905053 -----UUAGAUUCCAAAGCAGUCCAACAUAAUUGAAC-GCAAUUAGAAUUGCAAGUUUUAGCUACCGUUCUUGUUUUAGAUGCAGGGACCUUAAGUGUUGAAAGUCCAGUUGGAUCUAUUG -----.(((((.((((.(((((......((((((...-.))))))..)))))...(((((((....((((((((.......)))))))).......)))))))......)))))))))... ( -26.30, z-score = -1.41, R) >droEre2.scaffold_4770 4744491 92 + 17746568 -----UUAGAUUCCAAAAGAGUCCAACAUAAUUGAGCUGCAAUUAGAAAUGCAAGUUUCAGCUACCGUUUUCGCUCUAGAUCCUAUUGGAUCUAUUG------------------------ -----...(((((.....)))))..........((((((((........))))(((....))).........))))(((((((....)))))))...------------------------ ( -21.20, z-score = -2.28, R) >droYak2.chr3R 12940129 116 - 28832112 -----UUACAUUCCAAAGGAGUCCAGCACAAUCGAGCUGCAAUUAGAAUUGCAAGUUUCAGCAGCCGUUCUUAUUUUAGAAGCAGGCACCUUCAGUGUUGAAAGUCCUGUUGGAUCUAUUG -----......(((((((((.(.((((((....((((((((((....))))).))))).....(((.((((......))))...))).......))))))..).)))).)))))....... ( -32.00, z-score = -2.22, R) >droSec1.super_0 7778669 116 + 21120651 -----UUAGAUUCCAAAGGAGUCCAACAUAAUUGAACUGCAAUUAGAAUUGCAAGUUUCAGCUACCGUUCUUGUUUUAGAUGCAGGGACCUUAAGUGUUGAAAGUCCUGUUGGAUCUAUUG -----.(((((.((((((((.(.((((((..((((((((((((....))))).)).))))).....((((((((.......)))))))).....))))))..).)))).)))))))))... ( -34.50, z-score = -3.23, R) >droSim1.chr3R 14747520 116 + 27517382 -----UUAGAUUCCAAAGGAGUCCAACAUAAUUGAACUGCAAUUAGAAUUGCAAGUUUCAGCUACCGUUCUUGUUUUAGAUUCAGGGACCUUAAGUGUUGAAAGUCCUGUUGGAUCUAUUG -----.(((((.((((((((.(.((((((..((((((((((((....))))).)).))))).....(((((((.........))))))).....))))))..).)))).)))))))))... ( -32.20, z-score = -2.73, R) >droWil1.scaffold_181039 567697 109 + 740211 UACGAUUAAAUCUUUACAAGGUUUAUUAUAAUUAAUCACAGUAAAAAAAUUCUAGUUU--GUAUCUUCUUGUGCUUUACCUAUGCACUCCGAAGCACACGUAGGUCUAAAC---------- ......(((((((.....))))))).............................((((--(.((((.(.((((((((.............)))))))).).)))).)))))---------- ( -17.02, z-score = -0.91, R) >consensus _____UUAGAUUCCAAAGGAGUCCAACAUAAUUGAACUGCAAUUAGAAUUGCAAGUUUCAGCUACCGUUCUUGUUUUAGAUGCAGGGACCUUAAGUGUUGAAAGUCCUGUUGGAUCUAUUG ........(((((.....)))))((((((....((((((((((....)))))).))))...........((((.........))))........))))))..................... ( -8.56 = -8.35 + -0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:10:13 2011