| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,641,153 – 8,641,255 |
| Length | 102 |
| Max. P | 0.959040 |
| Location | 8,641,153 – 8,641,255 |
|---|---|
| Length | 102 |
| Sequences | 9 |
| Columns | 123 |
| Reading direction | forward |
| Mean pairwise identity | 65.42 |
| Shannon entropy | 0.64554 |
| G+C content | 0.39696 |
| Mean single sequence MFE | -25.43 |
| Consensus MFE | -9.03 |
| Energy contribution | -9.37 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.66 |
| SVM RNA-class probability | 0.959040 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8641153 102 + 27905053 ----------------AACAAAAUUAC-GGCAUUUCUGUGAAACCUUGAAACCCUUACUGGAAAAAAGGCCGACAAGG-AG--GGAAAUUACAUCGAUUGAUGUGAUUUGAAUGGCUGUCAU- ----------------.........((-(((..(((.......(((((....((((.........))))....)))))-..--..((((((((((....)))))))))))))..)))))...- ( -24.20, z-score = -1.69, R) >droSim1.chr3R 14740948 103 - 27517382 ----------------AACAAAAUUAC-GGAAUUUCUGUGAAACCUUGAAACCCUUACUGGGAAAAAGACUGACGAGGCCG--GGAAAUUACAUCGAUUGAUGUGAUUUGAAUGGCUGUCAU- ----------------.......((((-((.....))))))...(((....(((.....)))...)))..((((..(((((--..((((((((((....))))))))))...))))))))).- ( -29.90, z-score = -4.07, R) >droSec1.super_0 7772682 103 - 21120651 ----------------AACAAAAUUAC-GGAAUUUCUAUGAAACCUUGAAACCCUUACUGGGAAAAAGACUGACGAGGCCG--GGAAAUUACAUCGAUUGAUGUGAUUUGAAUGGCUGUCAU- ----------------.......(((.-.(.....)..)))...(((....(((.....)))...)))..((((..(((((--..((((((((((....))))))))))...))))))))).- ( -25.10, z-score = -2.72, R) >droYak2.chr3R 12933895 103 + 28832112 ----------------AACAAAAUUAC-GGAGUUUCUGCGAAACCUUGAAACCCUUACUGGGGAAAAGACUGACGAGGCCG--GGAAAUUACAUCGAUUGAUGUGAUUUGAAUAGCUGUCAU- ----------------..........(-(..(((((...)))))..))...((((....)))).......((((..(((..--..((((((((((....)))))))))).....))))))).- ( -22.70, z-score = -0.98, R) >droEre2.scaffold_4770 4738243 102 - 17746568 ----------------AACCAAAUUAC-GGAAUUUCCGCGAAACCUUGAAACCCUUACUGGG-AAAAGACUGACGAGGCGG--UGAAAUUACAUCGAUUGAUGUGAUUUGAAUAGAUGUCAU- ----------------.......(..(-((.....)))..)...(((....(((.....)))-..)))..(((((...(..--(.((((((((((....)))))))))).)...).))))).- ( -22.60, z-score = -1.49, R) >droAna3.scaffold_13340 14177462 114 - 23697760 AACGAAAAAAGACAAUUACUGGAAAACUAGCAUAGUCGGAGGACCUUGAA--------UGGGAAAAAGGCUUUCGAGGACAGUGGAUAUUACAUCGAUUGAUGUGAUUUGAGUAACUGGCAU- ............((.(((((.(((.(((..(....(((((((.((((...--------.......))))))))))).)..))).....(((((((....)))))))))).))))).))....- ( -25.60, z-score = -2.08, R) >dp4.chr2 19247606 103 - 30794189 ----------------AACAGAGAAACUAGCAUAGUCAUCAGGCCUUGAGACC--GGUUGGGAGACAGGCUUUCAGGGCCA-UGGAAAUUACAUCGAUUGAUGUGAUUUGAAUAACUGAUAU- ----------------..(((.................(((((((((((((((--.(((....))).)).)))))))))).-)))((((((((((....))))))))))......)))....- ( -33.50, z-score = -3.77, R) >droPer1.super_0 8972421 103 + 11822988 ----------------AACAGAGAAACUAGCAUAGUCAUCAGGCCUUGAGCCC--GGUUGGGAGACAGGCUUUCAGGGCCA-UGGAAAUUACAUCGAUUGAUGUGAUUUGAAUAACUGAUAU- ----------------..(((.................((((((((((((...--(((..(....)..)))))))))))).-)))((((((((((....))))))))))......)))....- ( -32.40, z-score = -2.86, R) >droWil1.scaffold_181089 11361125 95 + 12369635 ----------------------AUUGCUAGUUCAAAUGGUUGGCCAUAAAUCA---GACAGAAAACAAA-UGAAAUCAUCAUAAAGUAUUAAGCAAGCAGAAGCAUUUCG--UAAAUGUUGUU ----------------------.(((((.(((...((((....))))......---............(-(((.....)))).........))).))))).((((((...--..))))))... ( -12.90, z-score = 0.50, R) >consensus ________________AACAAAAUUAC_GGAAUUUCUGUGAAACCUUGAAACCCUUACUGGGAAAAAGACUGACGAGGCCG__GGAAAUUACAUCGAUUGAUGUGAUUUGAAUAGCUGUCAU_ ...........................................(((((.........................))))).......((((((((((....)))))))))).............. ( -9.03 = -9.37 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:10:07 2011