| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,615,687 – 8,615,756 |
| Length | 69 |
| Max. P | 0.575162 |
| Location | 8,615,687 – 8,615,756 |
|---|---|
| Length | 69 |
| Sequences | 6 |
| Columns | 81 |
| Reading direction | reverse |
| Mean pairwise identity | 58.99 |
| Shannon entropy | 0.74217 |
| G+C content | 0.40409 |
| Mean single sequence MFE | -13.92 |
| Consensus MFE | -5.53 |
| Energy contribution | -5.01 |
| Covariance contribution | -0.52 |
| Combinations/Pair | 1.69 |
| Mean z-score | -0.80 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.575162 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8615687 69 - 27905053 ----------GAAAUGACAGAACUUGCCGGAGUUCUGUAUGAUGUUUACGAUACAGCCAGGACAAACAU--UUAGUUCAUU ----------.((((((((((((((....))))))))).((.(((.......)))..)).......)))--))........ ( -13.70, z-score = -1.11, R) >droAna3.scaffold_13340 14153936 76 + 23697760 GUCCUGACAGGACCUGCCCAUACAUAU--GAACGUUGCCUGAUGUUGAC-AGAAGGCCAAAAACAACACUGCGAGCCAG-- ((((.....)))).(((.(((....))--)...(((((((..((....)-)..))))....)))......)))......-- ( -13.40, z-score = 0.15, R) >droYak2.chr3R 12908140 71 - 28832112 ----------GAAAUGACAGGACUUGCGGGAGUCCUGCAUGUUGUUUAUGGUACUGCCUGUAAAAACAUCAUUCGUUCAUU ----------((((((.((((((((....)))))))))))(((.(((((((.....)).))))))))....)))....... ( -18.40, z-score = -1.34, R) >droSec1.super_0 7747477 69 + 21120651 ----------GAAAUGACAGGACUUGCCGGAGUCCUGUGUGAUGUUUACGAUACAGCCAGGAUAAACAU--UUAGUUCAUU ----------(((...(((((((((....)))))))))..(((((((((...........).)))))))--)...)))... ( -16.90, z-score = -1.54, R) >droSim1.chr3R 14714217 69 + 27517382 ----------GAAAUGACAGCACUUGCCGGAGUCCUGUAUGAUGUUUACGAUACAGCCAGGAUAAACAU--UUAGUUCAUU ----------.(((((.(.((....)).)..((((((..((.((((...))))))..))))))...)))--))........ ( -12.70, z-score = -0.53, R) >triCas2.chrUn_55 56411 70 + 260580 ---------CAAAUUUUCAAUCAUUACUAAGCUAUGGUAUAAUAUUUUGGAGGCAAAGUGGAAAGAUAU--CAAAAGUAUU ---------.....................(((.((((((..(((((((....))))))).....))))--))..)))... ( -8.40, z-score = -0.42, R) >consensus __________GAAAUGACAGGACUUGCCGGAGUCCUGUAUGAUGUUUACGAUACAGCCAGGAAAAACAU__UUAGUUCAUU .................((((((((....)))))))).....(((((................)))))............. ( -5.53 = -5.01 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:10:04 2011