| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,612,665 – 8,612,762 |
| Length | 97 |
| Max. P | 0.935171 |
| Location | 8,612,665 – 8,612,762 |
|---|---|
| Length | 97 |
| Sequences | 11 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 63.52 |
| Shannon entropy | 0.73750 |
| G+C content | 0.45076 |
| Mean single sequence MFE | -23.54 |
| Consensus MFE | -12.32 |
| Energy contribution | -12.85 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.15 |
| Mean z-score | -0.81 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.39 |
| SVM RNA-class probability | 0.935171 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8612665 97 - 27905053 ------------UUCUGUUUUGGCAAAAAAGACGAAAAUGGGGAACGGAAAGUUGGUCGAAGGAGUCAUCUAUGUAUGAGUAAUCGCUUUCAUGCUUGAUGACCGAAAU ------------(((((((((.((......).).)))))))))..(((........((....)).(((((...(((((((........)))))))..)))))))).... ( -23.10, z-score = -1.15, R) >droSim1.chr3R 14711215 97 + 27517382 ------------UUCUGUUUUGGCAAAAAAGACGAAAAGGGGGAACGGAAAGUUGGUCGGAGGAGUCAUCUAUGUAUGAGUAAUCGCUUUCAUGCUUGAUGACCGAAAU ------------(((((((((..(..............)..)))))))))......((((.....(((((...(((((((........)))))))..)))))))))... ( -21.94, z-score = -0.49, R) >droSec1.super_0 7744578 97 + 21120651 ------------UUCUGUUUUGGCAAAAAAGACGAAAAGGGGGAACGGAAAGUUGGUCGGAGGAGUCAUCUAUGUAUGAGUAAUCGCUUUCAUGCUUGAUGACCGAAAU ------------(((((((((..(..............)..)))))))))......((((.....(((((...(((((((........)))))))..)))))))))... ( -21.94, z-score = -0.49, R) >droYak2.chr3R 12905190 97 - 28832112 ------------UUCUGUUUUGGCAAAAAAGACGGAAAGGGGGAACGGAAAGUUGGUCGGAGGAGUCAUCUAUGUAUGAGUAAUCGCUUUCAUGGUUGAUGACCGAAAU ------------(((((((((.......)))))))))......(((.....)))..((((....((((.(((((...((((....)))).))))).))))..))))... ( -23.70, z-score = -1.18, R) >droEre2.scaffold_4770 4709276 97 + 17746568 ------------UUCUGUUUUGGCAAAAAAGACGGAAAGGGGGAACGGAAAGUUGGUCGGAGGAGUCAUCUAUGUAUGAGUAAUCGCUUUCAUGGUUGAUGACCGAAAU ------------(((((((((.......)))))))))......(((.....)))..((((....((((.(((((...((((....)))).))))).))))..))))... ( -23.70, z-score = -1.18, R) >droAna3.scaffold_13340 14151378 84 + 23697760 -------------------------UUCUGUUUGGCCAAAAGGGGGGCAGCUCUGGUGGGGGUAGCCAUCUAUGUAUGAGUAAUCGCUUUCAUGCUUGAUGACCGAAAU -------------------------.....(((((.((...((..(((.(((((....))))).)))..))..(((((((........)))))))....)).))))).. ( -23.20, z-score = 0.06, R) >dp4.chr2 19216594 109 + 30794189 UUCUGAAUGAGUACGAGUACAAGAACGGAGUGCCGAGGGAUGCCGAGGAAGAAACAGAGAAUGAACCAUCUAUGUAUGAGUAAUCGCUUUCAUGCUUGAUGACCGAAAU (((((.....(((....))).....(((.((.(....).)).))).........))))).......((((...(((((((........)))))))..))))........ ( -23.00, z-score = -0.67, R) >droPer1.super_0 8943008 109 - 11822988 UUCUGAAUGAGUACGAGUACAAGAACGGGGUGCCGAGGGAUGCCGAGGAAGAAACAGAGAAUGAACCAUCUAUGUAUGAGUAAUCGCUUUCAUGCUUGAUGACCGAAAU (((((.....(((....))).....(((.((.(....).)).))).........))))).......((((...(((((((........)))))))..))))........ ( -25.10, z-score = -0.85, R) >droVir3.scaffold_12855 5919443 84 + 10161210 ------------------------UGGAAUUUUCGGAGUUAGU-GGGGCGGCGGGGAGCUACGCGUCAUCUAUGUAUGAGUAAUCGCUUUCAUGCUUGAUGGCCAAAAU ------------------------.................((-(..((........))..)))((((((...(((((((........)))))))..))))))...... ( -22.40, z-score = -0.24, R) >droMoj3.scaffold_6540 25560395 84 + 34148556 -------------------------UGCUCUAUGGGGCCCAGCAGGAGUCGCAGGGCACCACGCGUCAUCUAUGUAUGAGUAAUCGCUUUCAUGCUUGAUGGCCAACAU -------------------------.((....(((.((((.((.......)).)))).))).))((((((...(((((((........)))))))..))))))...... ( -29.00, z-score = -1.09, R) >droGri2.scaffold_14906 7342251 88 + 14172833 --------------------UGGACAUCGAAUUAGAAAUGGAAAAGAGGGGACGAGGUGGGGU-GUCGCCUAUGUAUGAGUAAUCGCUUUCAUGCUUGAUGGCUAAAAU --------------------(((.((((((................(((.((((........)-))).)))..(((((((........))))))))))))).))).... ( -21.90, z-score = -1.63, R) >consensus ____________UUCUGUUUUGGCAAAAAAGACGGAAAGGGGGAACGGAAAGUUGGUCGGAGGAGUCAUCUAUGUAUGAGUAAUCGCUUUCAUGCUUGAUGACCGAAAU ................................................................((((((...(((((((........)))))))..))))))...... (-12.32 = -12.85 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:10:03 2011