| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,604,797 – 8,604,898 |
| Length | 101 |
| Max. P | 0.657659 |
| Location | 8,604,797 – 8,604,898 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 60.84 |
| Shannon entropy | 0.71181 |
| G+C content | 0.29481 |
| Mean single sequence MFE | -19.75 |
| Consensus MFE | -6.06 |
| Energy contribution | -7.30 |
| Covariance contribution | 1.24 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.657659 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8604797 101 - 27905053 -CUGGCCACGUUUAAGGUCCAGGAAAAAUCUAUGACCUUAUGUGUUCAAUU--AUUUUAAAGAAUCUUUUUUAUAGA---UUUACAGUGAAUCACUUAUAUUAUUAG -.((..(((((..((((((..(((....)))..)))))))))))..))...--........((((((.......)))---)))..((((...))))........... ( -18.50, z-score = -1.34, R) >droSim1.chr3R 14703333 102 + 27517382 UCUGGGCACGUCUGAGGCCCAGAAAAAAUCUUUGAGCUUAUGUGUUAAAUU--AUUUUAAAGAAUCUUUUUUAUAGC---UUUACAGUAAAUCACGUAUAUUUAUAG (((((((.(......))))))))......((.((((..((((((.....((--(((.(((((..............)---)))).)))))..))))))..)))).)) ( -22.24, z-score = -2.13, R) >droYak2.chr3R 12896639 102 - 28832112 UCUGGGCUCGUAUAAGGUCCAGAACAAAUCUGUGAGCUAAUGUGUUCAAUU--AUUUUAAGACGUUUUUUUUUAUAAU--UUUACAGUGAAGC-UGUAUAUUAUUGG ((((((((.......)))))))).(((.....(((((......)))))...--.....................((((--..(((((.....)-)))).))))))). ( -21.40, z-score = -1.44, R) >droEre2.scaffold_4770 4701002 107 + 17746568 UCUGGGCACGUAUAAGGUCCAGAAUAAAUCUGUGAGCUUAUGUACUCAAUUUAAUUUAAGGAAACUUUUUUUUUAAAUUGUUUACAGUGAAGCAAUUAGUUUUUUCA (((((((.(......))))))))............((((.((((..((((((((...(((....))).....))))))))..))))...)))).............. ( -29.30, z-score = -4.14, R) >droAna3.scaffold_13340 14143723 93 + 23697760 UUUUGGUUUCCGCAG---CCCCAAUGAACUCAUAAAUUUUUGUAUUUGCUAAGAUUAUUAUUAAUAUUUCAAACUUA--AGUAAGAAUAAGCCUUUCA--------- (((((((....((((---.....(((....)))......))))....)))))))...(((((..(((((.......)--))))..)))))........--------- ( -7.30, z-score = 1.40, R) >consensus UCUGGGCACGUAUAAGGUCCAGAAAAAAUCUAUGAGCUUAUGUGUUCAAUU__AUUUUAAAAAAUCUUUUUUAUAAA___UUUACAGUGAAGCACUUAUAUUAUUAG (((((((.(......)))))))).........(((((......)))))........................................................... ( -6.06 = -7.30 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:10:01 2011