| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,598,980 – 8,599,080 |
| Length | 100 |
| Max. P | 0.845631 |
| Location | 8,598,980 – 8,599,080 |
|---|---|
| Length | 100 |
| Sequences | 8 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 84.63 |
| Shannon entropy | 0.30593 |
| G+C content | 0.52312 |
| Mean single sequence MFE | -33.98 |
| Consensus MFE | -26.03 |
| Energy contribution | -26.49 |
| Covariance contribution | 0.46 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.89 |
| SVM RNA-class probability | 0.845631 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8598980 100 - 27905053 ------------CAUCCGUCGCCGAGGGUAGCUGCCAUAAAAGCAUCAUAAACAUUUUACAGCAGUUGCAGUUGCUGCAGGAAACUGC-CCAGCAAGCGGAAACGGUGCCGCU-- ------------((.((((..(((...((((((((..(((((............)))))..))))))))..(((((((((....))))-..))))).)))..)))))).....-- ( -36.60, z-score = -2.26, R) >droSim1.chr3R 14697441 100 + 27517382 ------------CAUCCGUCGCCGAGGGUAGCUGCCAUAAAAGCAUCAUAAACAUUUUACAGCAGUUGCAGUUGCUGCAGGAAACUGC-CCAGCAAGCGGAAACGGUGCCGCU-- ------------((.((((..(((...((((((((..(((((............)))))..))))))))..(((((((((....))))-..))))).)))..)))))).....-- ( -36.60, z-score = -2.26, R) >droSec1.super_0 7730861 100 + 21120651 ------------CAUCCGUCGCCGAGGGUAGCUGCCAUAAAAGCAUCAUAAACAUUUUACAGCAGUUGCAGUUGCUGCAGGAAACUGC-CCAGCAAGCGGAAACUGUGCCGCU-- ------------...((........))((((((((..(((((............)))))..))))))))..(((((((((....))))-..)))))((((........)))).-- ( -33.20, z-score = -1.34, R) >droYak2.chr3R 12890678 100 - 28832112 ------------UAUCCGUCGCCUAGGGUAGCCACCAUAAAAGCAUCAUAAACAUUUUACAGCAGUUGCAGUUGCUGCAGGAAACUGC-CCAGCAAGCGGAAACGGUGCCGCU-- ------------(((((........)))))((((((......((.................((....))..(((((((((....))))-..)))))))(....)))))..)).-- ( -30.40, z-score = -1.09, R) >droEre2.scaffold_4770 4695178 100 + 17746568 ------------CAUCCGUCGCCUAGGGUAGCUGCCAUAAAAGCAUCAUAAACAUUUUACAGCAGUUGCAGUUGCUGCAGGAAACUGC-CCAGCAAGCGGAAACGGUGCCGCU-- ------------((.((((..((....((((((((..(((((............)))))..))))))))..(((((((((....))))-..)))))..))..)))))).....-- ( -34.40, z-score = -1.64, R) >droAna3.scaffold_13340 14138392 100 + 23697760 ------------CUUGCCGCGCCGAGGGCAGCUGCCAUAAAAGCAUCAUAAACAUUUUACAGCAGUUGCAGUUGCUGCAGGAAACUGCCCUAGCAAACGGAAACAGUGCCGU--- ------------...((.((((.....((((((((..(((((............)))))..))))))))..(((((((((....))))...)))))..(....).)))).))--- ( -34.20, z-score = -1.40, R) >dp4.chr2 19200849 111 + 30794189 CUUCAGGCCCUGAGCUCCGAGCCGAGGGCAGCUGCCAUAAAAGCAUCAUAAACAUUUUACAGCAGUUGCAGCUGCAGCAGGAAACAGCGCCAGCAA-CGGAAACAGUCCCAG--- .....((..(((...((((........((((((((..(((((............)))))..)))))))).((((..((.(....).))..))))..-))))..)))..))..--- ( -36.60, z-score = -2.02, R) >droWil1.scaffold_181089 11317648 93 - 12369635 -------------------GCCCGCGGGUGGCAGCCAUAAAAGCUUCAUAAACAUUUUACAGC--UUGCAGUUGUUGCAGGAAACUGCACCAGCAA-CGGAAACAGUGCCAACCU -------------------......((.(((((((.....(((((...............)))--)))).((((.(((((....))))).))))..-.(....)..))))).)). ( -29.86, z-score = -1.44, R) >consensus ____________CAUCCGUCGCCGAGGGUAGCUGCCAUAAAAGCAUCAUAAACAUUUUACAGCAGUUGCAGUUGCUGCAGGAAACUGC_CCAGCAAGCGGAAACGGUGCCGCU__ ...........................((((((((..(((((............)))))..)))))))).((((..((((....))))..))))..((((........))))... (-26.03 = -26.49 + 0.46)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:10:00 2011