| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,583,605 – 8,583,656 |
| Length | 51 |
| Max. P | 0.643596 |
| Location | 8,583,605 – 8,583,656 |
|---|---|
| Length | 51 |
| Sequences | 11 |
| Columns | 64 |
| Reading direction | reverse |
| Mean pairwise identity | 78.03 |
| Shannon entropy | 0.40147 |
| G+C content | 0.39870 |
| Mean single sequence MFE | -8.63 |
| Consensus MFE | -6.65 |
| Energy contribution | -6.40 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.12 |
| Mean z-score | -0.96 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.643596 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8583605 51 - 27905053 ----------AAAGUGCCACAUGUCAAUGUCAACUGCGAUGACAAAGACAAAUUCUUCCAG--- ----------...........((((..(((((.......)))))..))))...........--- ( -8.50, z-score = -0.82, R) >droSim1.chr3R_random 526369 52 - 1307089 ---------AAAAGUGCCACAUGUCAAUGUCAACUGCGAUGACAAAGAUAAAUUCUUUCAG--- ---------............(((((.(((.....))).)))))((((.....))))....--- ( -6.80, z-score = -0.12, R) >droSec1.super_0 7715507 52 + 21120651 ---------AAAAGUGCCACAUGUCAAUGUCAACUGCGAUGACAAAGAUAAAUUCUUUUAG--- ---------(((((.......((((..(((((.......)))))..))))....)))))..--- ( -6.90, z-score = -0.33, R) >droYak2.chr3R 12874077 52 - 28832112 ---------AAAAGUGCCACAUGUCAAUGUCAACGGCGAUGACAAAGAUAAAUUCUCCCAG--- ---------............(((((.(((.....))).))))).................--- ( -7.70, z-score = -0.66, R) >droEre2.scaffold_4770 4680022 52 + 17746568 ---------AAAAGUGCCACAUGUCAAUGUCAACGGCGAUGACAAAGAUAAAUUCUCCCAG--- ---------............(((((.(((.....))).))))).................--- ( -7.70, z-score = -0.66, R) >droAna3.scaffold_13340 14124570 52 + 23697760 ---------AAACGUACCACACGUCAAUGUCAAGAGCGAUGACAAUGACAAAUUUACCUAG--- ---------.............((((.(((((.......))))).))))............--- ( -10.20, z-score = -2.39, R) >dp4.chr2 19186048 61 + 30794189 AAAGGCAGAAACUGUACCACACGUCAAUGUCAACGGCGAUGACAAAGAUAAAUUCACCUAG--- ..(((.................((((.(((.....))).))))...((.....)).)))..--- ( -9.00, z-score = -0.56, R) >droPer1.super_0 8911604 61 - 11822988 AAAGGCAGAAACUGUACCACACGUCAAUGUCAACGGCGAUGACAAAGAUAAAUUCACCUAG--- ..(((.................((((.(((.....))).))))...((.....)).)))..--- ( -9.00, z-score = -0.56, R) >droWil1.scaffold_181089 11302470 55 - 12369635 ------AAAAAUCCAACCACAUGUCAAUGUCAACGGCGAUGACAAAGACAAAUUUACCUAU--- ------...............((((..(((((.......)))))..))))...........--- ( -8.50, z-score = -1.80, R) >droMoj3.scaffold_6540 25518564 54 + 34148556 ----------AAUGAACCACAUGUCAAUGUCAAAGGCGAUGACAAAGACAAAUUUACCUCGUAG ----------...........((((..(((((.......)))))..)))).............. ( -8.50, z-score = -0.91, R) >droGri2.scaffold_14906 7313963 54 + 14172833 ----------AGUGAACCACAUGUCAAUGUCAAAGGCGAUGACAAAGACAAAUUCACUUCUCAG ----------((((((.....((((..(((((.......)))))..))))..))))))...... ( -12.10, z-score = -1.75, R) >consensus _________AAAAGUACCACAUGUCAAUGUCAACGGCGAUGACAAAGAUAAAUUCACCUAG___ ......................(((..(((((.......)))))..)))............... ( -6.65 = -6.40 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:09:56 2011