| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,574,158 – 8,574,252 |
| Length | 94 |
| Max. P | 0.970776 |
| Location | 8,574,158 – 8,574,252 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 98.26 |
| Shannon entropy | 0.03072 |
| G+C content | 0.35812 |
| Mean single sequence MFE | -19.62 |
| Consensus MFE | -16.82 |
| Energy contribution | -16.82 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.96 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.84 |
| SVM RNA-class probability | 0.970776 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8574158 94 + 27905053 AAAACAAAGCAAUCAACUAGGGUAAAUAAACCAAAAAUGGCUAUGUUGUAUACCCGAGUAUAGCCAGUAAAGCACCAGAAACCAGAUUGAAAAA .........(((((......(((......))).....(((((((((((......))).))))))))..................)))))..... ( -18.20, z-score = -2.55, R) >droSim1.chr3R 14670556 91 - 27517382 AAAACAAAGCAAUCAACUAGGGUAAAUAAACCAAAAAUGGCUAUGUUGUAUACCCGAGU---GCCAGUAAAGCACCAGAAACCAGAUUGAAAAA .........(((((.....(((((.((((.(((....))).....)))).)))))(.((---((.......)))))........)))))..... ( -19.50, z-score = -2.88, R) >droSec1.super_0 7706176 91 - 21120651 AAAACAAAGCAAUCAACUAGGGUAAAUAAACCAAAAAUGGCUAUGUUGUAUACCCGAGU---GCCAGUAAAGCACCAGAAACCAGAUUGAAAAA .........(((((.....(((((.((((.(((....))).....)))).)))))(.((---((.......)))))........)))))..... ( -19.50, z-score = -2.88, R) >droYak2.chr3R 12864414 91 + 28832112 AAAACAAAGCAAUCAACUAGGGUAAAUAAACCAAAAAUGGCUAUGUUGUAUACCCGAGU---GCCAGUAAAGCACCAGAAACCAGAUUGAAAAA .........(((((.....(((((.((((.(((....))).....)))).)))))(.((---((.......)))))........)))))..... ( -19.50, z-score = -2.88, R) >droEre2.scaffold_4770 4670404 91 - 17746568 AAAACAAAGCAAUCAACUAGGGUAAAUAAACCAAAAAUGGCUAUGUUGUAUACCCGAGU---GCUAGUAAAGCACCAGAAACCAGAUUGAAAAA .........(((((.....(((((.((((.(((....))).....)))).)))))(.((---(((.....))))))........)))))..... ( -21.40, z-score = -3.60, R) >consensus AAAACAAAGCAAUCAACUAGGGUAAAUAAACCAAAAAUGGCUAUGUUGUAUACCCGAGU___GCCAGUAAAGCACCAGAAACCAGAUUGAAAAA .........(((((.(((.(((((.((((.(((....))).....)))).))))).)))...((.......))...........)))))..... (-16.82 = -16.82 + 0.00)
| Location | 8,574,158 – 8,574,252 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 98.26 |
| Shannon entropy | 0.03072 |
| G+C content | 0.35812 |
| Mean single sequence MFE | -20.74 |
| Consensus MFE | -17.66 |
| Energy contribution | -17.50 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.638136 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8574158 94 - 27905053 UUUUUCAAUCUGGUUUCUGGUGCUUUACUGGCUAUACUCGGGUAUACAACAUAGCCAUUUUUGGUUUAUUUACCCUAGUUGAUUGCUUUGUUUU .....(((((..((..(..(((...)))..)..))(((.(((((........(((((....)))))....))))).))).)))))......... ( -18.10, z-score = -0.88, R) >droSim1.chr3R 14670556 91 + 27517382 UUUUUCAAUCUGGUUUCUGGUGCUUUACUGGC---ACUCGGGUAUACAACAUAGCCAUUUUUGGUUUAUUUACCCUAGUUGAUUGCUUUGUUUU .....(((((........((((((.....)))---))).(((((........(((((....)))))....))))).....)))))......... ( -21.40, z-score = -2.22, R) >droSec1.super_0 7706176 91 + 21120651 UUUUUCAAUCUGGUUUCUGGUGCUUUACUGGC---ACUCGGGUAUACAACAUAGCCAUUUUUGGUUUAUUUACCCUAGUUGAUUGCUUUGUUUU .....(((((........((((((.....)))---))).(((((........(((((....)))))....))))).....)))))......... ( -21.40, z-score = -2.22, R) >droYak2.chr3R 12864414 91 - 28832112 UUUUUCAAUCUGGUUUCUGGUGCUUUACUGGC---ACUCGGGUAUACAACAUAGCCAUUUUUGGUUUAUUUACCCUAGUUGAUUGCUUUGUUUU .....(((((........((((((.....)))---))).(((((........(((((....)))))....))))).....)))))......... ( -21.40, z-score = -2.22, R) >droEre2.scaffold_4770 4670404 91 + 17746568 UUUUUCAAUCUGGUUUCUGGUGCUUUACUAGC---ACUCGGGUAUACAACAUAGCCAUUUUUGGUUUAUUUACCCUAGUUGAUUGCUUUGUUUU .....(((((........((((((.....)))---))).(((((........(((((....)))))....))))).....)))))......... ( -21.40, z-score = -2.50, R) >consensus UUUUUCAAUCUGGUUUCUGGUGCUUUACUGGC___ACUCGGGUAUACAACAUAGCCAUUUUUGGUUUAUUUACCCUAGUUGAUUGCUUUGUUUU .....(((((......((((((...))))))....(((.(((((........(((((....)))))....))))).))).)))))......... (-17.66 = -17.50 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:09:55 2011