| Sequence ID | dm3.chr2L |
|---|---|
| Location | 7,208,215 – 7,208,311 |
| Length | 96 |
| Max. P | 0.804681 |
| Location | 7,208,215 – 7,208,311 |
|---|---|
| Length | 96 |
| Sequences | 14 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 86.56 |
| Shannon entropy | 0.32099 |
| G+C content | 0.41266 |
| Mean single sequence MFE | -23.47 |
| Consensus MFE | -13.20 |
| Energy contribution | -13.96 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.804681 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 7208215 96 + 23011544 CGAUGGUGCUUUCCUAACAAUAAAGUAACCAGUCUUAAACAUAUCACCGAGCGUCCACAUGAUCACCAUGUGUAUGCU-CAUUCCAUAUGUUGAUUU .(((((((((((.........))))).)))).))...(((((((....((((((.((((((.....)))))).)))))-).....)))))))..... ( -26.70, z-score = -4.01, R) >anoGam1.chr3R 39818279 96 - 53272125 GGUCGGCGCGUGUCUUAAAACAAAGUAACCAGUCUUAAACAUAUCACCAGCGGUCCACAUGAUCACCAUGCAGAUGCU-CAUCCCGUGGGUGGACUU (((((((......(((......)))......)))..........((((.((((....((((.....))))..(((...-.))))))).)))))))). ( -20.70, z-score = 0.76, R) >droMoj3.scaffold_6500 13652611 96 - 32352404 CGAUGGUGCGUUCCUCGCGAUAAAGUAACCAGUCUUGAACAUAUCACCGAGCGUCCACAUUAUCACCAUGUGAAUGCU-CAUACCAUAUGUUGAUUU .(((((((((.....))).........)))).)).(.(((((((....((((((.(((((.......))))).)))))-).....))))))).)... ( -22.30, z-score = -1.17, R) >droVir3.scaffold_12963 4502354 96 - 20206255 CGAUGGCGCAUUUCUAGCAAUAAAGUAACCAGUCUUGAACAUAUCACCGAGCGUCCACAUGAUCACCAUGUGUAUGCU-CAUACCAUAUGUUGAUUU (((.(((......((........))......))))))(((((((....((((((.((((((.....)))))).)))))-).....)))))))..... ( -23.00, z-score = -1.59, R) >droWil1.scaffold_180772 3341186 96 - 8906247 GGAUGGCGCUUUUCUAACAAUAAAAUAACCAGUCUUAAACAUAUCACCGAGCGUCCACAUGAUUACCAUGUGUAUGCU-CAUUCCAUAUGUUGAUUU ((((((...((((........))))...))).)))..(((((((....((((((.((((((.....)))))).)))))-).....)))))))..... ( -21.90, z-score = -2.41, R) >droPer1.super_1 7901595 96 - 10282868 CGAUGGUGCUUUCCUAACAAUAAAAUAACCAGUCUUAAACAUAUCACCGAGCGUCCACAUGAUCACCAUGUGUAUGCU-CAUUCCAUAUGUUGAUUU .((((((....................)))).))...(((((((....((((((.((((((.....)))))).)))))-).....)))))))..... ( -23.65, z-score = -3.29, R) >dp4.chr4_group3 10790568 96 - 11692001 CGAUGGUGCUUUCCUAACAAUAAAAUAACCAGUCUUAAACAUAUCACCGAGCGUCCACAUGAUCACCAUGUGUAUGCU-CAUUCCAUAUGUUGAUUU .((((((....................)))).))...(((((((....((((((.((((((.....)))))).)))))-).....)))))))..... ( -23.65, z-score = -3.29, R) >droAna3.scaffold_12916 15110387 96 + 16180835 UGAGGGUGCUUGCCUUACAAUAAAGUAACCAGUCUUAAACAUAUCACCGAGCGUCCACAUGAUCACCAUGUGUAUGCU-CAUUCCAUAUGUCGAUUU (((((.((.((((.(((...))).)))).)).))))).((((((....((((((.((((((.....)))))).)))))-).....))))))...... ( -26.10, z-score = -2.83, R) >droEre2.scaffold_4929 16128056 96 + 26641161 CGAUGGUGCUUUUCUAACAAUAAAGUAACCAGUCUUAAACAUAUCACCGAGCGUCCACAUGAUCACCAUGUGUAUGCU-CAUUCCAUAUGUCGAUUU .(((((((((((.........))))).)))).))....((((((....((((((.((((((.....)))))).)))))-).....))))))...... ( -26.00, z-score = -3.82, R) >droYak2.chr2L 16630117 96 - 22324452 CGAUGGGGCUUUCCUAACAAUAAAGUAACCAGUCUUGAACAUAUCACCGAGCGUCCACAUGAUCACCAUGUGUAUGCU-CAUACCAUAUGUUGAUUU .(((.(((((((.........)))))..)).))).(.(((((((....((((((.((((((.....)))))).)))))-).....))))))).)... ( -25.10, z-score = -2.13, R) >droSec1.super_3 2731772 96 + 7220098 CGAUGGGGCUUUCCUAACAAUAAAGUAACCAGUCUUAAACAUAUCACCGAGCGUCCACAUGAUCACCAUGUGUAUGCU-CAUUCCAUAUGUUGAUUU .(((.(((((((.........)))))..)).)))...(((((((....((((((.((((((.....)))))).)))))-).....)))))))..... ( -24.90, z-score = -2.64, R) >droSim1.chr2L 6997791 96 + 22036055 CGAUGGGGCUUUCCUAACAAUAAAGUAACCAGUCUUAAACAUAUCACCGAGCGUCCACAUGAUCACCAUGUGUAUGCU-CAUUCCAUAUGUUGAUUU .(((.(((((((.........)))))..)).)))...(((((((....((((((.((((((.....)))))).)))))-).....)))))))..... ( -24.90, z-score = -2.64, R) >triCas2.ChLG5 9571406 97 - 18847211 GAUCGGCGCCUCACGCAGUAAAAAAUACAAAGUUUUAAAAAUAUCACCACACGUCCACAUUAUCACCAUACUGACACUGCAAUUCAGAAAUGAAUCA ..............(((((..(((((.....)))))................(((.................)))))))).(((((....))))).. ( -11.43, z-score = -0.72, R) >droGri2.scaffold_15126 4766733 96 + 8399593 CGAGGGUGCUUUUCUAGCGACAAAGUAACCAGUCUUGAACAUAUCACCGAGCGUCCACAUGACCACCAUGUGUAUGCU-CAUACCAUAUGUGGAUUU ...((.((((((((....)).)))))).))(((((...((((((....((((((.((((((.....)))))).)))))-).....))))))))))). ( -28.30, z-score = -2.32, R) >consensus CGAUGGUGCUUUCCUAACAAUAAAGUAACCAGUCUUAAACAUAUCACCGAGCGUCCACAUGAUCACCAUGUGUAUGCU_CAUUCCAUAUGUUGAUUU ..............................((((....((((((.....(((((.((((((.....)))))).))))).......)))))).)))). (-13.20 = -13.96 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:23:12 2011