| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,556,339 – 8,556,431 |
| Length | 92 |
| Max. P | 0.833439 |
| Location | 8,556,339 – 8,556,431 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 80.41 |
| Shannon entropy | 0.33279 |
| G+C content | 0.56531 |
| Mean single sequence MFE | -17.62 |
| Consensus MFE | -15.88 |
| Energy contribution | -15.88 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.10 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.84 |
| SVM RNA-class probability | 0.833439 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8556339 92 + 27905053 AUUCAAUUAUGCUCCUCCUGAGCAAUUUGCC------------------ACCCAC----CACCCCGC-UCCACCAACCCGCGGCAAACUAAUCGUAAUUGAAGACUGCGCCGCGG .........(((((.....))))).......------------------......----........-.........(((((((.......(((....))).......))))))) ( -20.04, z-score = -2.26, R) >droEre2.scaffold_4770 4654601 115 - 17746568 AUUCAAUUAUGCUCCUACUGUGCAAUUUGCCCCUUCCCCGCUCCCCGCUACCCGCUCCUCACUCCGCCUCCACCAACCCGCGGCAAACUAAUCGUAAUUGAAGACUGCGCCGCGG .(((((((((((.........))..((((((........((.....)).................((............))))))))......)))))))))..((((...)))) ( -17.60, z-score = -0.19, R) >droYak2.chr3R 12843700 108 + 28832112 AUUCAAUUAUGCUCCUACUGUGCAAUUUUCCC-------GCUCCACAGUCCCCUGUCCCCCGUCCACCAACCUCCACCCGCGGCAAACUAAUCGUAAUUGAAGACUGCGCCGCGG ................((((((..........-------....))))))............................(((((((.......(((....))).......))))))) ( -18.58, z-score = -1.06, R) >droSec1.super_0 7691330 97 - 21120651 AUUCAAUUAUGCUCCUCCUGUGCAAUUUGCCC------------------CCCUCACCACUUGCCCCCUCCCCCAACCCGCGGCAAACUAAUCGUAAUUGAAGACUGCGCCGCGG .........(((.........)))........------------------...........................(((((((.......(((....))).......))))))) ( -15.94, z-score = -0.99, R) >droSim1.chr3R 14652838 97 - 27517382 AUUCAAUUAUGCUCCUCCUGUGCAAUUUGCCC------------------CCCUCACCACUUGCCCCCUCCCCCAACCCGCGGCAAACUAAUCGUAAUUGAAGACUGCGCCGCGG .........(((.........)))........------------------...........................(((((((.......(((....))).......))))))) ( -15.94, z-score = -0.99, R) >consensus AUUCAAUUAUGCUCCUCCUGUGCAAUUUGCCC__________________CCCUCACCACACGCCCCCUCCCCCAACCCGCGGCAAACUAAUCGUAAUUGAAGACUGCGCCGCGG .........(((.........))).....................................................(((((((.......(((....))).......))))))) (-15.88 = -15.88 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:09:52 2011