| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,552,389 – 8,552,482 |
| Length | 93 |
| Max. P | 0.813589 |
| Location | 8,552,389 – 8,552,482 |
|---|---|
| Length | 93 |
| Sequences | 7 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 70.83 |
| Shannon entropy | 0.58613 |
| G+C content | 0.47243 |
| Mean single sequence MFE | -17.48 |
| Consensus MFE | -8.59 |
| Energy contribution | -10.15 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.45 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.813589 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8552389 93 - 27905053 CAUACUUUCACCCCGAACUUUCACCCAUCGUUCGGCAAUCUCCUGCUGAUGGAUCACAUGCAACUGCCAUUGUGUUUGGCUCUUUCAUCGCUG ............((((((...........)))))).........((.((((((............((((.......))))...)))))))).. ( -17.06, z-score = -0.56, R) >droSim1.chr3R 14649027 93 + 27517382 CUUACUUUCACCCCGAACUUUCACCCAGCGUUCGGCAAUCUCCCGCUGAUGGAUCACAUGCAACUGCCAUUGUUUUUGGCUCUUUCAUCGCGG ............((((((...........)))))).......((((.((((((............((((.......))))...)))))))))) ( -21.86, z-score = -1.93, R) >droSec1.super_0 7687545 93 + 21120651 CUUACUUUCACCCCGAACUUUCACCCAGCGUUCGGCAAUCUCCCGCUGAUGGAUCGCAUGCAACUGCCAUUGUUUUUGGCUCUUUCAUCGCGG ............((((((...........)))))).......((((.((((((..(....)....((((.......))))...)))))))))) ( -22.80, z-score = -1.71, R) >droYak2.chr3R 12839789 93 - 28832112 CCUACUUUCACCCCGAACUUUCACCCAUCGUUCGGCAAUCUCCUGCUGAUGGAUCACAUGCAACUGCCAUUGUGUUUGGCUUUUUCAUCGCGG ............((((((...........)))))).......((((.((((((............((((.......))))...)))))))))) ( -19.66, z-score = -1.11, R) >droEre2.scaffold_4770 4650925 93 + 17746568 CUUACUUUCACCCCGAACUUUCACCCUUCGUUCGGCUAUCUCCUGCUGAUGGAUCACAUGCAACUGCCAUUGUGUUUGGCUUUUUCAUCGCGG ............((((((...........)))))).......((((.((((((............((((.......))))...)))))))))) ( -19.66, z-score = -1.68, R) >droAna3.scaffold_13340 14099379 83 + 23697760 -------UCACUUUUA---UUCAUCCAUUUUGGGAAUAUCCCAGCCAGAUGGAUAACAUGCAACUUCCAUUGUUUUUGUCUCUCCCAUCCAUG -------.......((---((((((....(((((.....)))))...))))))))(((.((((......))))...))).............. ( -15.40, z-score = -1.39, R) >droWil1.scaffold_181089 11273503 78 - 12369635 ------AUCAAUUUAA---UUAAA--ACUUUUUAACAAGCUUUGGUUCAUUUCACUUUUGUUACCGUCAGCGUCUCCGUCUCCGUUCCC---- ------..........---.....--............(((.((((.((.........))..))))..)))..................---- ( -5.90, z-score = -0.47, R) >consensus CUUACUUUCACCCCGAACUUUCACCCAUCGUUCGGCAAUCUCCUGCUGAUGGAUCACAUGCAACUGCCAUUGUGUUUGGCUCUUUCAUCGCGG ............((((((...........)))))).......((((.((((((............((((.......))))...)))))))))) ( -8.59 = -10.15 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:09:51 2011