| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,546,556 – 8,546,650 |
| Length | 94 |
| Max. P | 0.594653 |
| Location | 8,546,556 – 8,546,650 |
|---|---|
| Length | 94 |
| Sequences | 7 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 67.00 |
| Shannon entropy | 0.61713 |
| G+C content | 0.45620 |
| Mean single sequence MFE | -19.19 |
| Consensus MFE | -7.20 |
| Energy contribution | -6.67 |
| Covariance contribution | -0.53 |
| Combinations/Pair | 1.64 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.594653 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8546556 94 - 27905053 GUGUUUGCACCGCCCUUAUCAGUCAGCUGAUAU----ACCCCACACAACUGAAACUAAUCGGAGA----------GAAAGAGCCAAAGAGCGCGGAAA--CAAAACAAAA- .(((((...((((.((((((((....)))))..----...........((((......))))...----------............))).))))...--..)))))...- ( -18.70, z-score = -1.45, R) >droSec1.super_0 7681826 96 + 21120651 GUGUUUGCACCGCCCUUAUCAGUCAGCUGAUAU----ACCCCACACAACUGAAACAAAUCAGCGA----------GAAAGAGCGAAAGAGCGCGGAAAAGCAAAACAAAU- ((.(((((.((((...((((((....)))))).----...........((((......))))...----------....(..(....)..)))))....)))))))....- ( -21.30, z-score = -2.23, R) >droSim1.chr3R 14641472 96 + 27517382 GUGUUUGCACCGCCCUUAUCAGUCAGCUGAUAU----ACCCCACACAACUGAAACUAAUCAGCGA----------GAAAGAGCGAAAGAGCGCGGAAAAGCAAAACAAAA- ((.(((((.((((...((((((....)))))).----...........((((......))))...----------....(..(....)..)))))....)))))))....- ( -21.30, z-score = -1.98, R) >droYak2.chr3R 12833661 90 - 28832112 GUGUUUGCACCUCCCUUAUCAGUCAGCUGAUAC----GCCCCGCACAACU------AAUCAGAGA----------GAGUAGAGAAAAGAGCGCGGCAAAACAAAACAAAA- .(((((..........((((((....)))))).----(((.(((.(..((------(.((.....----------)).)))......).))).))).)))))........- ( -17.60, z-score = -0.92, R) >droEre2.scaffold_4770 4644865 90 + 17746568 GUGUUUGCACCUUUCUUAUCAGUCAGCUGAUAC----GCCUCACCCAACU------AAUCAGAGA----------GAAAGAGAUAAAGAGCGCGGCAAAACAAAACAAAA- ((.(((((........((((((....))))))(----(((((......((------..((.....----------))...)).....))).)))))))))).........- ( -17.50, z-score = -1.16, R) >droAna3.scaffold_13340 14093531 109 + 23697760 GCGAUUGUACCGCCCUUAUCAGUCAGCUGAUAUUCGCGCCCUCCACCACCCUCGCCUAGCGGUGAUUAGACUAAUCAGAGAGCGAAAAGACGCGGAAA--CAAAACAAACA ....((((.((((...((((((....))))))(((((...(((........(((((....)))))...((....)).))).))))).....))))..)--)))........ ( -27.50, z-score = -2.07, R) >droVir3.scaffold_12855 5836591 96 + 10161210 CUAUGUGCAUAGUCUACUACAGUC-CCUUAUGUCCCUCUCCCCCAUCAUUAUUCCAAAUUGAG------------CAAAGCAAACAACGAUG-AGAAGCACAAAACGUAU- ...(((((.(((....))).....-...........((((.....(((...........)))(------------(...))..........)-))).)))))........- ( -10.40, z-score = -0.04, R) >consensus GUGUUUGCACCGCCCUUAUCAGUCAGCUGAUAU____ACCCCACACAACUGAAAC_AAUCAGAGA__________GAAAGAGCGAAAGAGCGCGGAAAAACAAAACAAAA_ ((((((..........((((((....))))))................((..........)).........................)))))).................. ( -7.20 = -6.67 + -0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:09:50 2011