| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,528,737 – 8,528,795 |
| Length | 58 |
| Max. P | 0.837852 |
| Location | 8,528,737 – 8,528,795 |
|---|---|
| Length | 58 |
| Sequences | 6 |
| Columns | 64 |
| Reading direction | forward |
| Mean pairwise identity | 65.55 |
| Shannon entropy | 0.61504 |
| G+C content | 0.55070 |
| Mean single sequence MFE | -21.10 |
| Consensus MFE | -10.28 |
| Energy contribution | -10.32 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.62 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.837852 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8528737 58 + 27905053 GCAAUCUAUGCCUCAGGCAGAGCUGGAGCAUGAGUCUGGCUCUGACUUCGAGUUAGAA------ ....((((...((((((((((((..((.......))..)))))).))).))).)))).------ ( -21.80, z-score = -1.49, R) >droSim1.chr3R 14623549 58 - 27517382 GCAGUCUAUGCCACCGGCAGAGCUGGAGCAUGAUUCUGGCUCUGGCUCUGAGCUAGAA------ ....((((.((((..(.((((((..(((.....)))..)))))).)..)).)))))).------ ( -23.70, z-score = -1.31, R) >droSec1.super_0 7664424 58 - 21120651 GGAGUCUAUGCCACCGGCAGAGCUGGAGCAUGAUUCUGGCUCUGGCUCUGAGCUAGAA------ ((((((.((((..(((((...))))).))))))))))...((((((.....)))))).------ ( -23.90, z-score = -1.52, R) >droYak2.chr3R 12816118 52 + 28832112 GCCGUCUGUACCUCAGGCAGGGCUGGAGCUUGA------CUCGGGCUCAGAGCUAGAA------ ((((((((.....))))).(((((.(((.....------))).))))).).)).....------ ( -19.50, z-score = -0.31, R) >droEre2.scaffold_4770 4627091 52 - 17746568 GCAGUCUGUACCUCCGGCAGGGCUGGAGCUUGA------CUCUGGCUCUGAGCUAGAA------ ...(((.....(((((((...)))))))...))------)((((((.....)))))).------ ( -19.90, z-score = -0.63, R) >anoGam1.chr3R 15191878 64 + 53272125 GGAAUUUGCUCCGAAAUCAGAAUCGGCUUCGAAGUCGUAGUCGGUUUCGGCAUUCUAAUAAGAA (((((.....((((((((.((..(((((....)))))...)))))))))).)))))........ ( -17.80, z-score = -1.76, R) >consensus GCAGUCUAUGCCUCAGGCAGAGCUGGAGCAUGA_UCUGGCUCUGGCUCUGAGCUAGAA______ ...............(((.((((((((((.........))))))))))...))).......... (-10.28 = -10.32 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:09:50 2011