| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,511,962 – 8,512,066 |
| Length | 104 |
| Max. P | 0.640033 |
| Location | 8,511,962 – 8,512,066 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 89.23 |
| Shannon entropy | 0.19180 |
| G+C content | 0.54038 |
| Mean single sequence MFE | -35.06 |
| Consensus MFE | -26.16 |
| Energy contribution | -25.72 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.640033 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8511962 104 + 27905053 UCGUGGGAUAGCACUUAGAUUGACACUCGAUUGGAUGAUUGAUCUUGACCUCCGAUCCGCGCGGAUGAACCAAUGGUCCAACCAGCGUCCACUAAGCUCCCCCA ...((((..(((..((((...(((.((.(.((((((.((((....((.....))((((....))))....)))).))))))).)).)))..)))))))..)))) ( -28.50, z-score = -0.79, R) >droEre2.scaffold_4770 4607327 104 - 17746568 CCAAGGGGUAGCACCAAGAUUGGCACUCGAUUGGUUGAUUGAUCUUGACCUCCGAUCCACACGGAUGAACCAAUGGGCCGACAAGCGCCUAUUAAGCUCCACUA ....(((((.....((((((..(((..(....)..)).)..)))))).(.((((.......)))).)....((((((((.....).)))))))..))))).... ( -28.10, z-score = -0.46, R) >droYak2.chr3R 12799111 104 + 28832112 UCGGUGGAUAGCACCAAGAUUGGCACUCGCUUGGAUGAUUGAUCUUGACCUCCUAUCCACCCGGAUGAACCAAUGGGCCAACCAGCGCCCAUUAAGCUCCACUA ..(((((((((...((((((..(((..(....)..)).)..)))))).....))))))))).(((.(....((((((((.....).)))))))...)))).... ( -37.50, z-score = -3.54, R) >droSec1.super_0 7647662 104 - 21120651 UCGGGGGAUAGCACAUAGAUUGGCGCUCGAUUGGAUGAUUGAUCUUGACCUCCGAUCCGCGCGGAUGAACCAAUGGGCCAACCAGCGCCCAUUAAGCUCCCCCA ..((((((..((......(((.((((..(((((((.(.((......))).))))))).)))).))).....((((((((.....).)))))))..)))))))). ( -42.10, z-score = -2.80, R) >droSim1.chr3R 14606341 104 - 27517382 UCGGGGGAUAGCACUUAGAUUGGCGCUCGAUUGGAUGAUUGAUCUUGACCUCCGAUCCGCGCGGAUGAACCAAUGGGCCAACCAGCGCCCAUUAAGCUCCCUCA ..((((((..((......(((.((((..(((((((.(.((......))).))))))).)))).))).....((((((((.....).)))))))..)))))))). ( -39.10, z-score = -2.03, R) >consensus UCGGGGGAUAGCACCUAGAUUGGCACUCGAUUGGAUGAUUGAUCUUGACCUCCGAUCCGCGCGGAUGAACCAAUGGGCCAACCAGCGCCCAUUAAGCUCCCCCA ..((((((..((....((((..(((..(....)..)).)..)))).........((((....)))).....((((((((.....).)))))))..)))))))). (-26.16 = -25.72 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:09:48 2011