| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,494,616 – 8,494,736 |
| Length | 120 |
| Max. P | 0.558492 |
| Location | 8,494,616 – 8,494,736 |
|---|---|
| Length | 120 |
| Sequences | 13 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 88.09 |
| Shannon entropy | 0.27757 |
| G+C content | 0.48974 |
| Mean single sequence MFE | -36.02 |
| Consensus MFE | -27.90 |
| Energy contribution | -27.34 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.558492 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8494616 120 + 27905053 UAGCAACUCCUCCGGCUUUCGGCUCCUGGACGGCGACCAGCUCGAAAACAAUUCGAGUGUCAGCCGCAACUCGAUCUACAAACUGAAGAUCGAUCUCAUGUUUGACGAUUCCAGGUGAGU .....((((..(((.....)))..(((((((((((((..(((((((.....)))))))))).))))....(((((((.(.....).)))))))(((((....))).)).)))))).)))) ( -40.10, z-score = -2.20, R) >droSim1.chr3R 14589016 120 - 27517382 UAACUGCUCCUCCGGCUUUCUGCUCCUGGACAGCGACCAGCUCGAAAAUAAUUCCAGUGUCCCCCGCAACUCGAUCUACAAACUGAAGAUCGAUCUCAUGUUUGACGAUUCCAGGUGAGU .....((((....(((.....)))((((((..(((....(((.(((.....))).)))......)))...(((((((.(.....).)))))))(((((....))).)).)))))).)))) ( -29.10, z-score = -0.83, R) >droSec1.super_0 7630392 120 - 21120651 UAGCAACUCCUCCGGCUUUCGGCUCCUGGACGGCGACCAGCUCGAAAACAAUUCGAGUGUCAGCCGCAACUCGAUCUACAAACUGAAGAUCGAUCUCAUGUUUGACGAUUCCAGGUGAGU .....((((..(((.....)))..(((((((((((((..(((((((.....)))))))))).))))....(((((((.(.....).)))))))(((((....))).)).)))))).)))) ( -40.10, z-score = -2.20, R) >droYak2.chr3R 12781609 120 + 28832112 UAGCAACUCCUCCGGCUUUCGGCUCCUGGACGGCGACCAGCUCGAAAACAAUUCGAGUGUCAGCCGCAACUCGAUCUACAAACUGAAGAUCGAUCUCAUGUUUGACGAUUCCAGGUGAGU .....((((..(((.....)))..(((((((((((((..(((((((.....)))))))))).))))....(((((((.(.....).)))))))(((((....))).)).)))))).)))) ( -40.10, z-score = -2.20, R) >droEre2.scaffold_4770 4589520 120 - 17746568 UAGCAACUCCUCCGGCUUUCGGCUCCUGGACGGCGACCAGCUCGAAAACAAUUCGAGUGUCAGCCGAAACUCAAUCUACAAACUGAAGAUCGAUCUCAUGUUUGACGAUUCCAGGUGAGU .....((((..(((.....)))..(((((((((((((..(((((((.....)))))))))).))))............((((((((.((....))))).))))).....)))))).)))) ( -37.90, z-score = -2.06, R) >droAna3.scaffold_13340 17016058 120 - 23697760 CAGCAACUCCUCCGGCUUCCGGCUCCUGGACGGCGAUCAGCUCGAAAAUAAUUCGAGUGUCAGCCGCAACUCGAUCUACAAACUCAAGAUAGAUCUUAUGUUUGACGAUUCCAGGUGAGU .....((((..((((...))))..(((((((((((((..(((((((.....)))))))))).))))............(((((..((((....))))..))))).....)))))).)))) ( -38.60, z-score = -2.29, R) >dp4.chr2 25049370 120 - 30794189 CAGCAACUCUUCCGGCUUUCGGCUCUUGGACGGCGACCAGCUCGAAAACAAUUCGAGUGUCAGUCGAAAUUCGAUAUACAAACUGAAGAUCGAUCUAAUGUUUGACGAUUCCAGGUGAGU .....((((..(((.....)))..(((((((((((((..(((((((.....)))))))))).))))............(((((...(((....)))...))))).....)))))).)))) ( -31.90, z-score = -0.34, R) >droPer1.super_19 396383 120 - 1869541 CAGCAACUCUUCCGGCUUUCGGCUCUUGGACGGCGACCAGCUCGAAAACAAUUCGAGUGUCAGUCGAAAUUCGAUAUACAAACUGAAGAUCGAUCUAAUGUUUGACGAUUCCAGGUGAGU .....((((..(((.....)))..(((((((((((((..(((((((.....)))))))))).))))............(((((...(((....)))...))))).....)))))).)))) ( -31.90, z-score = -0.34, R) >droWil1.scaffold_181130 2398662 120 + 16660200 UAGCAACUCUUCCGGCUUCCGGCUCUUGGAUGGCGAUCAGCUUGAAAACAAUUCAAGUGUCAGUCGAAAUUCGAUAUACAAACUCAAGAUCGAUCUGAUGUUUGAUGAUUCCAGGUGAGU .....((((..((((...))))..((((((...(.(((((((((((.....)))))))(((((((((..((.((.........))))..)))).)))))...)))))..)))))).)))) ( -30.80, z-score = -0.34, R) >droVir3.scaffold_13047 11128175 120 - 19223366 UAGCAACUCAUCCGGCUUUCGGCUACUGGACGGCGAUCAGCUCGAGAACAAUUCGAGUGUCAGUCGAAAUUCGAUAUACAAACUUAAGAUCGAUCUAAUGUUUGACGAUUCCAGGUGAGU .....(((((((.((...(((...((((((...(((((.(((((((.....)))))))((..((((.....))))..))........))))).))))..))....)))..)).))))))) ( -33.60, z-score = -1.08, R) >droMoj3.scaffold_6540 28096318 120 + 34148556 AAGCAACUCAUCCGGCUUUCGACUUCUGGACGGCGAUCAGCUCGAGAACAACUCGAGUGUCAGUCGAAACUCGAUAUACAAACUCAAAAUCGAUCUAAUGUUUGACGAUUCCAGGUGAGU .....(((((((((..((((((((....((((.....).(((((((.....))))))))))))))))))..))..............(((((.((........)))))))...))))))) ( -33.90, z-score = -1.27, R) >droGri2.scaffold_15074 1526622 120 + 7742996 UAGCAACUCAUCCGGAUUCCGGCUACUGGACGGCGAUCAGCUCGAAAACAAUUCGAGUGUCAGUCGAAAUUCGAUAUACAAACUUAAGAUCGAUCUAAUGUUUGACGAUUCCAGGUGAGU .....((((((((((...))))...((((((((((((..(((((((.....)))))))))).))))............(((((...(((....)))...))))).....))))))))))) ( -35.40, z-score = -1.96, R) >anoGam1.chr2R 45210710 120 - 62725911 CAGUGUCUCGUCCGGCUUCCGGCUGAUGGAUGCGGACCAGCUGGACACCACGUCCACCGUGAGCCGCAACAGCAUCUACAAGCUGCGGAUAGACGCAAUGUUCGACGACACGAGGUGAGU ..((((((.(((((.....(((((.((((..((......))(((((.....))))))))).)))))...((((........)))))))))))))))....((((......))))...... ( -44.90, z-score = -0.92, R) >consensus UAGCAACUCCUCCGGCUUUCGGCUCCUGGACGGCGACCAGCUCGAAAACAAUUCGAGUGUCAGCCGAAACUCGAUCUACAAACUGAAGAUCGAUCUAAUGUUUGACGAUUCCAGGUGAGU .....((((..((((...))))...((((((((((((..(((((((.....)))))))))).))))............(((((...(((....)))...))))).....)))))..)))) (-27.90 = -27.34 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:09:45 2011