| Sequence ID | dm3.chr2L |
|---|---|
| Location | 7,206,306 – 7,206,382 |
| Length | 76 |
| Max. P | 0.586341 |
| Location | 7,206,306 – 7,206,382 |
|---|---|
| Length | 76 |
| Sequences | 13 |
| Columns | 79 |
| Reading direction | reverse |
| Mean pairwise identity | 76.64 |
| Shannon entropy | 0.53457 |
| G+C content | 0.56244 |
| Mean single sequence MFE | -25.43 |
| Consensus MFE | -12.15 |
| Energy contribution | -11.75 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.586341 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 7206306 76 - 23011544 AACGCGGAUCUUCACCAGUGGACAACUCCUUAUGACGAAGUGUCUCGCUGGUC---GCCUGGCCAGCAAUCGAUGUGAA ..(((((((((((..((..(((....)))...))..)))).)))).(((((((---....))))))).......))).. ( -24.00, z-score = -1.15, R) >droSim1.chr2L 6995906 76 - 22036055 AACGCGGAUCUUCACCAGUGGACAACUCCUUAUGACGAAGUGUCUCGCUGGUC---GCCUGGCCAGCAAUCGACGUGAA ..(((((((((((..((..(((....)))...))..)))).)))..(((((((---....)))))))......)))).. ( -25.70, z-score = -1.57, R) >droSec1.super_3 2729887 76 - 7220098 AACGCGGAUCUUCACCAGUGGACAACUCCUUAUGACGAAGUGUCUCGCUGGUC---GCUUGGCCAGCAAUCGACGUGAA ..(((((((((((..((..(((....)))...))..)))).)))..(((((((---....)))))))......)))).. ( -25.70, z-score = -1.63, R) >droYak2.chr2L 16628247 76 + 22324452 AACGCGGAUCUUCUCCUGUGGAUAACUCCUUAUGACGAAGUGUCUCGCUGGUC---GCCUGGCCAGCAAUCGACGUAAA .((((((((((((((.((.(((....))).)).)).)))).)))..(((((((---....)))))))...)).)))... ( -24.30, z-score = -2.08, R) >droEre2.scaffold_4929 16126180 76 - 26641161 AACGCGGAUCUUCUCCUGUGGAUAACUCCUUAUGACGAAGUGUCUCGCUGGUC---GCCUGGCCAGCAAUCGACGUAAA .((((((((((((((.((.(((....))).)).)).)))).)))..(((((((---....)))))))...)).)))... ( -24.30, z-score = -2.08, R) >droAna3.scaffold_12916 15108496 76 - 16180835 AACGCAGCUCAUCGCCGGUGGACAGCUCCUUAUGACGAAGUGUCUCGCUGGUC---GCCUGGCCAGCCAUCGAUGUGAA ..((((((.....))(((((((((..((........))..))))..(((((((---....)))))))))))).)))).. ( -24.80, z-score = -0.16, R) >dp4.chr4_group3 10788435 76 + 11692001 AACGCAGCUCCUCGCCGCUGGACAGCCAGUUAUGACGAAGUGUCUCGCUGGUC---GCUUGGCCAGCCAUCGAUGUGAA ..((((((((.(((..(((((....)))))..))).).))).....(((((((---....)))))))......)))).. ( -24.70, z-score = -0.12, R) >droPer1.super_1 7899466 76 + 10282868 AACGCAGCUCCUCGCCGCUGGACAGCCAGUUAUGACGAAGUGUCUCGCUGGUC---GCUUGGCCAGCCAUCGAUGUGAA ..((((((((.(((..(((((....)))))..))).).))).....(((((((---....)))))))......)))).. ( -24.70, z-score = -0.12, R) >droWil1.scaffold_180772 3339192 63 + 8906247 ----------------GCUGGAAAGUCAAUUAUGACGCAGCGUUUCGCUGGUCUCGGCAUGGCCAGCCAUCGAUGUGAA ----------------((((....((((....)))).)))).....(((((((.......)))))))............ ( -20.60, z-score = -0.86, R) >droVir3.scaffold_12963 4499450 76 + 20206255 AGCGCAGCUCCUCGUCAAUGGACUCGCAUUUAUGACGAAGCGUCUCGCUGGUC---GCCUGGCCAGCCAUCGAUGUCAA .(((.((.(((........)))))))).....(((((...((....(((((((---....)))))))...)).))))). ( -26.10, z-score = -1.10, R) >droMoj3.scaffold_6500 13649606 76 + 32352404 AGCGCAGCUCCUCGCCGCUGGACACGCACUUAUGACGAAGCGUUUCGCUGGUC---GCCUGGCCAGCGAUCGAUGUCAA .(((((((........))))....))).....(((((...((..(((((((((---....))))))))).)).))))). ( -29.50, z-score = -1.04, R) >droGri2.scaffold_15126 4763920 76 - 8399593 AGCGCAGCCCCUCGCUGCUGGACUCACAUUUAUGACGAAGUGUCUCGCUGGUC---GCGUGGCCAGCCAUCGAUGUUAA ...(((((.....)))))..(((((((((((......))))))...(((((((---....)))))))....)).))).. ( -23.80, z-score = -0.17, R) >anoGam1.chr3R 39816963 71 + 53272125 -----AACGCGAAAUCGCUCGAGGACAUCUUAUGACGGCACGCAUCACUGGCC---UUCUGGCCAGUGAUGAGUGUAGA -----...(((....)))((((((....))).)))..((((.(((((((((((---....))))))))))).))))... ( -32.40, z-score = -4.46, R) >consensus AACGCAGCUCCUCGCCGCUGGACAACCACUUAUGACGAAGUGUCUCGCUGGUC___GCCUGGCCAGCCAUCGAUGUGAA ...(((...........................((((...))))..(((((((.......)))))))......)))... (-12.15 = -11.75 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:23:11 2011