| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,487,537 – 8,487,637 |
| Length | 100 |
| Max. P | 0.588129 |
| Location | 8,487,537 – 8,487,637 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 78.97 |
| Shannon entropy | 0.38202 |
| G+C content | 0.54960 |
| Mean single sequence MFE | -35.75 |
| Consensus MFE | -22.56 |
| Energy contribution | -24.00 |
| Covariance contribution | 1.45 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.588129 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8487537 100 - 27905053 ------UUGGCCAGGCCGUCGAUAACU-----UUGGCCGCGCAUAUUCAUGCCAUCCAGCUGGGAUGCCUGGCUAGCUCCAUGGCAUCAUCCGAAAGGAAACUGGUUAUCU ------.((((((((((((.((.....-----(((((((.((((.((((.((......)))))))))).))))))).)).)))))....(((....)))..)))))))... ( -38.20, z-score = -1.85, R) >droSim1.chr3R 14581776 100 + 27517382 ------UUGGCCAGGCCGUCGAUAACU-----UUGGCCGCGCAUAUUCAUGCCAUCCAGCUGGGAUGGCUGGCUAGCUCCAUGGCAUCAUCUGAAAGGAAACUGGUUAUUU ------.((((((((((((.((.....-----((((((((((((....))))(((((.....))))))).)))))).)).)))))....(((....)))..)))))))... ( -36.60, z-score = -1.41, R) >droSec1.super_0 7623436 100 + 21120651 ------UUGGCCAGGCCGUCGAUAACU-----UUGGCCGCGCAUAUUCAUGCCAUCCAGCUGGGAUGCCUGGCUAGCUCCAUGGCAUCAUCCGAUAGGAAACUGGUUAUUU ------.((((((((((((.((.....-----(((((((.((((.((((.((......)))))))))).))))))).)).)))))....(((....)))..)))))))... ( -35.20, z-score = -0.98, R) >droYak2.chr3R 12774175 100 - 28832112 ------UUGGCCAGGCCGUCGAUAACU-----UUGGCCGCGCAUAUUCAUGUCAUCCAGCUGGGAUGCCCGGCCAGCAGCAUAGCAUCAUCCGAAAGGAAACUGGUUCCCU ------..((((((......(((....-----.((((((.((((.((((.((......)))))))))).))))))((......))))).(((....)))..)))))).... ( -34.50, z-score = -0.94, R) >droEre2.scaffold_4770 4582112 100 + 17746568 ------UCGGCCAAGCCGUCGAUAACU-----UUGGCCGCGCAUAUUCAUGCCAACCAACUCGGAUGCCCGGCCAGCUCCAUAGCAUCAUCCGAAAGGAAACUGGUUCCCU ------.((((((((...........)-----))))))).((((....)))).(((((.....(((((..((......))...))))).(((....)))...))))).... ( -29.40, z-score = -1.04, R) >droAna3.scaffold_13340 17008929 97 + 23697760 UCGGUUGCGGCCAGUCCGUCGAUAGCUCUGGACUGGCCCCGCAUAUUCAUGCCAAGCAAC----------GGCGAGGAUCGCUGCAUCACAGCCUGGAAAACAGGUU---- ...(((((((((((((((..(....)..))))))))))..((((....))))...)))))----------((((.....)))).......((((((.....))))))---- ( -40.60, z-score = -2.49, R) >consensus ______UUGGCCAGGCCGUCGAUAACU_____UUGGCCGCGCAUAUUCAUGCCAUCCAGCUGGGAUGCCUGGCUAGCUCCAUGGCAUCAUCCGAAAGGAAACUGGUUAUCU ........((((((......(((.........(((((((.((((....))))(((((.....)))))..))))))).........))).(((....)))..)))))).... (-22.56 = -24.00 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:09:44 2011