| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,475,811 – 8,475,863 |
| Length | 52 |
| Max. P | 0.573651 |
| Location | 8,475,811 – 8,475,863 |
|---|---|
| Length | 52 |
| Sequences | 3 |
| Columns | 52 |
| Reading direction | forward |
| Mean pairwise identity | 94.87 |
| Shannon entropy | 0.07064 |
| G+C content | 0.36124 |
| Mean single sequence MFE | -6.13 |
| Consensus MFE | -6.10 |
| Energy contribution | -6.10 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.84 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.573651 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8475811 52 + 27905053 AAUGGAUAAUAUCCAGAAAGAUGCCCAUCUAUAAAGCAUUAAGAAUCCAUCG ..(((((...)))))....(((((...........)))))............ ( -6.10, z-score = -0.80, R) >droSim1.chr3R 14570059 52 - 27517382 AAUGGAUAAUAUCCAGCAAGAUGCCCAUCUACAAAGCAUUAAGAAUCCAUCG ..(((((...)))))....(((((...........)))))............ ( -6.10, z-score = -0.73, R) >droSec1.super_0 7611710 51 - 21120651 AAUGGAUAAUAUCCAGCAAGAUGCC-AUCUAUAAAGCAUUAAGAAUCCAACG ..(((((...)))))....(((((.-.........)))))............ ( -6.20, z-score = -0.99, R) >consensus AAUGGAUAAUAUCCAGCAAGAUGCCCAUCUAUAAAGCAUUAAGAAUCCAUCG ..(((((...)))))....(((((...........)))))............ ( -6.10 = -6.10 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:09:43 2011