| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,473,852 – 8,473,946 |
| Length | 94 |
| Max. P | 0.515373 |
| Location | 8,473,852 – 8,473,946 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 71.17 |
| Shannon entropy | 0.52202 |
| G+C content | 0.46946 |
| Mean single sequence MFE | -23.93 |
| Consensus MFE | -11.94 |
| Energy contribution | -12.63 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.515373 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8473852 94 + 27905053 GAAAACCGGAGUCAAAUCGAAGUUAUAGCAACAGCUGAAAGUCUCGAG-------AACA-----GGCGAAUGCAGCUGUAUUCCUUAUCUACACAUCCCGGUGUUU- ....(((((.(((...(((((.((.((((....)))).)).).)))).-------....-----)))((((((....))))))..............)))))....- ( -23.00, z-score = -1.33, R) >droSim1.chr3R 14568094 95 - 27517382 GAAAACCGGAGUUAAAUCGAAGUUAUAGCAACAGCUGAAAGUCUCGAG-------AACC-----GGCGACUGCAGCUGUAUUCCUUAUCUACACAUCCCGGUGUUUU ....(((((.(((((((....))).)))).(((((((..(((((((..-------...)-----)).)))).)))))))..................)))))..... ( -25.60, z-score = -1.94, R) >droSec1.super_0 7609749 95 - 21120651 GAAAACCGGAGUCAAAUCGAAGUUAUAGCAACAGCUGAAAGUCUCAAG-------AACC-----GGCGACUGCAGCUGUAUUCCUUAUCUACACAUCCCGGUGUUUU ....(((((............((....)).(((((((..((((.(...-------....-----.).)))).)))))))..................)))))..... ( -22.40, z-score = -1.17, R) >droYak2.chr3R 12759021 106 + 28832112 GAAAACCGGAGUCAAGUCGAAGUUGUAGCAACAGCUGAAAGUCUCGAGUACUCAGAACUCAGGAACCAACUGCAGCUGUAUUCUUAAUCUACACAUCCCGUCGAUU- ..............((((((...(((((..(((((((....((..((((.......))))..))........))))))).........))))).......))))))- ( -21.20, z-score = 0.24, R) >droEre2.scaffold_4770 4568354 99 - 17746568 GAAAACCGGAGUCAAAUCGAAGUGGUAGCAACAGCUGAAAGUCUCGAG-------AGCUCGAGAAGCGACUGCAGCUGUAUUCUUAAGCUACACAUCCCGGUGAUU- ....(((((..((.....)).((((((((.(((((((....((((((.-------...))))))........)))))))........))))).))).)))))....- ( -31.20, z-score = -2.06, R) >droPer1.super_19 374867 74 - 1869541 ----------GGCAGCAGGCAG--GCAGCAACAGCUGAAACUCUAAAG-----AGAACC--AACGCAAGCUGCAUUUGUAUCGCAUCGCAUCG-------------- ----------.(((((..((..--.((((....))))...(((....)-----))....--...))..)))))....................-------------- ( -20.20, z-score = -0.79, R) >consensus GAAAACCGGAGUCAAAUCGAAGUUAUAGCAACAGCUGAAAGUCUCGAG_______AACC_____GGCGACUGCAGCUGUAUUCCUUAUCUACACAUCCCGGUGUUU_ ....(((((..((.....))..........(((((((..((((........................)))).)))))))..................)))))..... (-11.94 = -12.63 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:09:42 2011