| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,469,699 – 8,469,806 |
| Length | 107 |
| Max. P | 0.666283 |
| Location | 8,469,699 – 8,469,806 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 84.98 |
| Shannon entropy | 0.25351 |
| G+C content | 0.48271 |
| Mean single sequence MFE | -28.96 |
| Consensus MFE | -23.82 |
| Energy contribution | -24.74 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.666283 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8469699 107 - 27905053 ------AAUAUUCAUCCAUUUUUGCUCGCUUAAGAUAAGGUACUCCAUGCCAAGUACCUCCGUGGGCAACAUGGUACACUCGACU--GUGUACCCCACAUCACUGGGUAAUCGCU ------.......(((((...((((((((........(((((((........)))))))..))))))))...(((((((......--))))))).........)))))....... ( -30.80, z-score = -2.51, R) >droSim1.chr3R 14563902 109 + 27517382 ------AAUAUCCAUCCAUCAUUGCUCGCUUAAGAUAAGGUACUCCAUGCCAAGUACCUACAUGGGCAACACGGUACACUCGACUGUGUGUACCCCACAGCACUGGGUAAUCGCU ------.......(((((....((((.(((((.(...(((((((........))))))).).))))).....(((((((........)))))))....)))).)))))....... ( -30.10, z-score = -1.48, R) >droSec1.super_0 7605588 109 + 21120651 ------AAUAUCCAUCCAUCAUUGCUCGCUUAAGAUAAGGUACUCCAUGCCAAGUACCUCCGUGGGCAACACGGUACACUCGGCUGUGUGUACCCCACAGCACUGGGUAAUCGCU ------..((((((.......((((((((........(((((((........)))))))..))))))))...(((((((........))))))).........))))))...... ( -32.40, z-score = -1.49, R) >droYak2.chr3R 12754609 110 - 28832112 UAAGCACAUAUCCAUCCAUCAUUCCUCGCUUAAGAUAAGGUACU-CAUGCCAAGUACCUCCGUGGGUAACUCGGUACACUUGACA--GCG--CUCCGCAUCACUGGGUAAUCGCU ..(((...(((((((..........((......))..(((((((-.......)))))))..)))))))(((((((.(....)...--(((--...)))...)))))))....))) ( -24.10, z-score = -0.37, R) >droEre2.scaffold_4770 4564008 112 + 17746568 UACGCAAAUAUCCAUCCAUCAUUCCUCGCUUAAGAUAAGGUAAU-CAAGGCAAGUACCUCCGUGGGUAGCACGGUACACUUAACU--GUGUACCCCGCAUUACUGGGUAAUCACU ........((((((.............((((..(((......))-).))))..........(((((..(((((((.......)))--))))..))))).....))))))...... ( -27.40, z-score = -1.21, R) >consensus ______AAUAUCCAUCCAUCAUUGCUCGCUUAAGAUAAGGUACUCCAUGCCAAGUACCUCCGUGGGCAACACGGUACACUCGACU__GUGUACCCCACAUCACUGGGUAAUCGCU ........((((((.......((((((((........(((((((........)))))))..))))))))...(((((((........))))))).........))))))...... (-23.82 = -24.74 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:09:41 2011