| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,453,422 – 8,453,530 |
| Length | 108 |
| Max. P | 0.561177 |
| Location | 8,453,422 – 8,453,530 |
|---|---|
| Length | 108 |
| Sequences | 11 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 68.52 |
| Shannon entropy | 0.65238 |
| G+C content | 0.47138 |
| Mean single sequence MFE | -25.21 |
| Consensus MFE | -11.29 |
| Energy contribution | -11.29 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.85 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.561177 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8453422 108 - 27905053 GGAAAGUUCCUAACGCGUGACGGGUCAUGUGACGGCACGUGACGUCACAGCAGAUUCACAUUCAGCAAUAC--UUUCAGUUCCAG----GGCAAUUUUUCAUCGUACUCGCAAC ((((((((((((((..(((((..((((((((....))))))))))))).((.((.......)).)).....--.....)))...)----)).)))))))).............. ( -28.80, z-score = -1.51, R) >droSim1.chr3R 14545740 108 + 27517382 AGAAAUAUCCUAACGCGUGGCGGGUCAUGUGACGGCACGUGACGUCACAGCAGAUUCACAUUCAGCAAUAC--UUUCAGUUCCAG----GGCAAUUUUUCAUCGUACUCGCAAC .((((..(((((((..(((((..((((((((....))))))))))))).((.((.......)).)).....--.....)))..))----)).....)))).............. ( -24.00, z-score = -0.29, R) >droSec1.super_0 7586572 108 + 21120651 AGAAAUAUCCUAACGCGUGGCGGGUCAUGUGACGGCACGUGACGUCACAGCAGAUUCACAUUCAGCAAUAC--UUUCAGUUCCAG----GGCAAUUUUUCAUCGUACUCGCAAC .((((..(((((((..(((((..((((((((....))))))))))))).((.((.......)).)).....--.....)))..))----)).....)))).............. ( -24.00, z-score = -0.29, R) >droYak2.chr3R 12740123 108 - 28832112 CGAAAGUUCCUAACGCGUGGCGGGUCAUGUGACGGCACGUGACGUCACAGCAGAUUCACAUUCAGCAAUAC--UUUCAGUUCCAG----GGCAAUUUUUCCUCGUACUCGCAAC .((((((.........(((((..((((((((....))))))))))))).((.((.......)).))...))--))))(((.(.((----((.......)))).).)))...... ( -27.70, z-score = -0.73, R) >droEre2.scaffold_4770 4548003 108 + 17746568 AGAAUGUUCCUAACGCGUGUCAGGUCAUGUGACGGCACGUGACGUCACAGCAGAUUCACAUUCAGCAAUAC--UUUCAGUUCCAG----GGCAAUUUUUCAUCGUACUCGCAAC .((((((.......((.(((.(.((((((((....)))))))).).)))))......)))))).((.....--.....(((....----)))...........(....)))... ( -23.02, z-score = 0.00, R) >droAna3.scaffold_12911 3388916 111 - 5364042 GAAAAAUCCCUGUCGCCUGU---GUCAUGUGACGGCACGUGACGUCACAACCAGCUCCACUCGAGCCCCACUGUUUUUUUUGCAGCCCCAGCGAUUUUUCCUCGCACUCUCAAC ((((((((.(((..((.(((---((((((((....))))))))..........((((.....))))...............)))))..))).)))))))).............. ( -31.20, z-score = -3.09, R) >dp4.chr2 2561380 81 - 30794189 ---------------------GAGUCAUGUGAUGGCACGUGACGUCACAACAAAUUUUACACAGA--------CUUCGAUUCCAG----AGUAAUUUUUCUUCGUGCUCGCAAC ---------------------(((((.(((((((........)))))))..............(.--------...))))))..(----((((...........)))))..... ( -16.00, z-score = 0.10, R) >droPer1.super_7 2732179 81 - 4445127 ---------------------GAGUCAUGUGAUGGCACGUGACGUCACAACAAAUUUUACACAGA--------CUUCGAUUCCAG----AGUAAUUUUUCUUCGUGCUCGCAAC ---------------------(((((.(((((((........)))))))..............(.--------...))))))..(----((((...........)))))..... ( -16.00, z-score = 0.10, R) >droVir3.scaffold_12822 6814 103 + 4096053 -GCAAAAUACGGUCACACGCAAAGUCAUGUGACGGCACGUGACGUCACAAUAAA-UUCUACACAGUUU-----GACCCGUGUCAG----AGUGAUUUUUCUUCGUACUUGCAAC -((((..(((((((((..((...(((....))).))..)))))...........-.......((.(((-----(((....)))))----).)).........)))).))))... ( -27.20, z-score = -1.15, R) >droMoj3.scaffold_6540 16801661 104 + 34148556 GAAAAAUUGUGGUCACACGUAAAGUCAUGUGACGGCACGUGACGUCACAAUAAG-UUUUACACAGCCU-----GACCCGUGUCAG----AGUGAUUUUUCUUCGUACUUGCAAC (((((((((((....)))((((((...(((((((........))))))).....-))))))...((((-----(((....)))))----.)))))))))).............. ( -27.70, z-score = -0.76, R) >droGri2.scaffold_14906 12555173 103 + 14172833 -GUAAUAUGCGGUCACACGCAAAGUCAUGUGACGGCACGUGACGUCACAACGAAUUUUUACACAGUCU-----GACCCGUGUCAG----AGUGAUUUUU-UUCGUACUUGCAAC -((((..((((......))))..((((((((....))))))))......(((((........((.(((-----(((....)))))----).))......-)))))..))))... ( -31.64, z-score = -1.77, R) >consensus _GAAAAUUCCUAACGCGUGGCGAGUCAUGUGACGGCACGUGACGUCACAACAAAUUCACAUUCAGCAA_AC__UUUCAGUUCCAG____AGCAAUUUUUCUUCGUACUCGCAAC .......................((((((((....))))))))....................................................................... (-11.29 = -11.29 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:09:40 2011