| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,446,284 – 8,446,351 |
| Length | 67 |
| Max. P | 0.803530 |
| Location | 8,446,284 – 8,446,351 |
|---|---|
| Length | 67 |
| Sequences | 7 |
| Columns | 67 |
| Reading direction | forward |
| Mean pairwise identity | 71.46 |
| Shannon entropy | 0.56422 |
| G+C content | 0.44882 |
| Mean single sequence MFE | -15.70 |
| Consensus MFE | -9.93 |
| Energy contribution | -9.40 |
| Covariance contribution | -0.53 |
| Combinations/Pair | 1.30 |
| Mean z-score | -0.81 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.803530 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8446284 67 + 27905053 AUUAGCCAAGUUAAUGCGGGGCUUUAAAGUCCGAGGAAAAGGCUAAAAAAGAGCCAAGAAAAUGCCA .((((((..((....)).(((((....)))))........))))))..................... ( -14.30, z-score = -0.31, R) >droEre2.scaffold_4770 4540605 65 - 17746568 AUUAGCCAAGUUAAUGCGGGGCUUUAAAGUCCGAGAAAGAGGCUAAAA--GAGCCAAGAAAUGGCCG .((((((..((....)).(((((....)))))........))))))..--(.((((.....))))). ( -19.20, z-score = -2.07, R) >droYak2.chr3R 12732735 65 + 28832112 AUUAGCCAAGUUAAUGCGGGGCUUUAAAGUCCAAGGAAAAGGCUAAAA--GAGCCAAGAAAUGGCCA .((((((..((....)).(((((....)))))........))))))..--(.((((.....))))). ( -19.20, z-score = -1.86, R) >droSec1.super_0 7579506 56 - 21120651 AUUAGCCAAGUUAAUGCGGGGCUUUAAAGUCCGAGGAAAAGGCCAAGAAAAUGGUA----------- ....((((.((....))..((((((....((....)).)))))).......)))).----------- ( -12.10, z-score = -0.53, R) >droSim1.chr3R 14538754 67 - 27517382 AUUAGCCAAGUUAAUGCGGGGCUUUAAAGUCCGAGGCAAAGGCUAAAAAAGAGCCAAGAAAAUGCCA ....(((..((....)).(((((....)))))..)))...((((.......))))............ ( -16.70, z-score = -0.75, R) >droPer1.super_7 2725330 67 + 4445127 AUUAGCCGAAUAAAUGUACGGCUUAAAGGCCCGGCCAAACGGCAUAAAAAACGCCGGAGAUCCCUUG ...(((((.((....)).)))))..((((((((((.................))))).)...)))). ( -15.53, z-score = -0.22, R) >dp4.chr2 2554582 67 + 30794189 AUUAGCCGAAUAAAUGUACGGCUUAAAGGCCCGGCCAAACGGCAUAAAAAACGCCAGAGAUCCCUUG ...(((((.((....)).)))))....(((...)))....(((.........)))............ ( -12.90, z-score = 0.05, R) >consensus AUUAGCCAAGUUAAUGCGGGGCUUUAAAGUCCGAGGAAAAGGCUAAAAAAGAGCCAAGAAAACGCCA ....(((..((....)).(((((....)))))........)))........................ ( -9.93 = -9.40 + -0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:09:38 2011