| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,441,937 – 8,442,041 |
| Length | 104 |
| Max. P | 0.643798 |
| Location | 8,441,937 – 8,442,041 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 79.08 |
| Shannon entropy | 0.39612 |
| G+C content | 0.38823 |
| Mean single sequence MFE | -20.25 |
| Consensus MFE | -13.80 |
| Energy contribution | -13.97 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.643798 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8441937 104 - 27905053 -----UCCGUAUUUUUUUUUUUUAAAGGGUAGACUGUAACCGGAAGCAGCUGCAAAAAUAAAUCGCAAAAUAUGUGAGACUGUCCAGCAGUUAACCUUCGAACUUUUCC -----...............((..((((((((.((((........)))))))).........(((((.....)))))(((((.....)))))..))))..))....... ( -21.70, z-score = -1.02, R) >droSim1.chr3R 14533230 100 + 27517382 ---AUCCUAUUUAAAAAAAAGGGUA------GAAUGUAACCGGAAGCAGCUGCAAAAAUAAAUCGCAAAAUAUGUGAGACUGUCCAGCAGUUAACCUUCGAACUUUUCC ---.............((((((((.------.......))).((((.((((((.........(((((.....))))).........))))))...))))...))))).. ( -18.77, z-score = -1.09, R) >droSec1.super_0 7575203 100 + 21120651 -----ACCGUAU----UUAAAAAAAAGGGUAGAAUGUAACCGGAAGCAGCUGCAAAAAUAAAUCUCAAAAUAUGUGAGACUGUCCAGCAGUUAACCUUCCAACUUUUCC -----.......----......((((((((........)))(((((.((((((.........(((((.......))))).......))))))...)))))..))))).. ( -20.69, z-score = -2.03, R) >droYak2.chr3R 12728174 103 - 28832112 -----UCCGAGUGAAAAAAAGGGAAGAGUGCGAAUGUAACCGGAAGCAGCUGCAAAAAUAAAUCGCAAAAUAUGUGAGACUGUCCAGCAGUUAACCUUCGAACUUUCC- -----...............((((((....((((.((...(....).((((((.........(((((.....))))).........)))))).)).))))..))))))- ( -21.97, z-score = -1.09, R) >droEre2.scaffold_4770 4536136 97 + 17746568 -----UCCGAGUAAAAAAAAGGGGA------GAACGAAACCGGAAGCAGCUGCAAAAAUAAAUCGCAAAAUAUGUGAGACUGUCCAGCAGUUAACCUUCGAACUUUCC- -----...............((..(------(..((((..(....).((((((.........(((((.....))))).........))))))....))))..))..))- ( -20.97, z-score = -1.36, R) >droAna3.scaffold_12911 3375555 107 - 5364042 CUCUUCCUAAAAAAAAAAAAUUGAAGAA--AAAAGUCAUCCGGAAGCAGCUGCAAAAAUAAAUCGCAAAAUAUGUGAGACUGUCCAGCAGUUAACCUUCGAACUUGUGC ....................((((((..--..........(....).((((((.........(((((.....))))).........))))))...))))))........ ( -17.37, z-score = -1.02, R) >consensus _____UCCGAAUAAAAAAAAGGGAA__G__AGAAUGUAACCGGAAGCAGCUGCAAAAAUAAAUCGCAAAAUAUGUGAGACUGUCCAGCAGUUAACCUUCGAACUUUUCC ..........................................((((.((((((.........(((((.....))))).........))))))...)))).......... (-13.80 = -13.97 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:09:38 2011