| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,424,276 – 8,424,377 |
| Length | 101 |
| Max. P | 0.759199 |
| Location | 8,424,276 – 8,424,377 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 91.88 |
| Shannon entropy | 0.13742 |
| G+C content | 0.47881 |
| Mean single sequence MFE | -30.42 |
| Consensus MFE | -26.78 |
| Energy contribution | -26.62 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.759199 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8424276 101 + 27905053 GUAGAAAAUUCAAAAGCUUGCAGCUUUUCGGGGGG-AAGAACUAACAAUCCACACAC----GGAGCAACUAUUCCAUGUGCUCGUCUAUCCCAAAAGGUUGCGGCU ..............((((.(((((((((.((((((-(...........))).((((.----((((......)))).))))........)))).))))))))))))) ( -29.40, z-score = -2.16, R) >droEre2.scaffold_4770 4518778 100 - 17746568 GUGGAAAAUGAAAAAGCUUGCAGCUUUUCGGGGGA--AAAACUAACAAUCCCCACCC----GGAGCAACUAUCCCAUGUGCUCGUCUAUCCCAAAAGGUUGCGGCU ..............((((.(((((((((.((((((--...........)))))....----.(((((.(........))))))........).))))))))))))) ( -28.20, z-score = -1.01, R) >droYak2.chr3R 12710316 100 + 28832112 GGGGAAAAUGAAAAAGCUUGCAGCUUUUCGGGGGG--AAAACUAACAAUCCCCACCC----GGAGCAACUAUCCCAUGUGCUCGGCUAUCCCAAAAGGUUGCGGCU ..............((((.(((((((((.((((((--(..........)))))..((----(.((((.(........)))))))).....)).))))))))))))) ( -32.50, z-score = -0.79, R) >droSec1.super_0 7557806 105 - 21120651 GUGGAAAAUUUAAAAGCUUGCAGCUUUUCGGGGGG-AAAAACUAACAAUCCACACACACAUGGAGCAACUAUCCCAUGUGCUCGUCUAUCCCAAAAGGUUGCGGCU ..............((((.(((((((((.((((((-(...........))).....(((((((..........)))))))........)))).))))))))))))) ( -31.00, z-score = -2.19, R) >droSim1.chr3R 14515550 104 - 27517382 CUGGAAAAUUUAAAAGCUUGCAGCUUUUCGGGGGGGAAAAACUAACAAUCCACACACA--UGGAGCAACUAUCCCAUGUGCUCGUCUAUCCCAAAAGGUUGCGGCU ..............((((.(((((((((.((((.(((...........)))...((((--(((..........)))))))........)))).))))))))))))) ( -31.00, z-score = -2.05, R) >consensus GUGGAAAAUUAAAAAGCUUGCAGCUUUUCGGGGGG_AAAAACUAACAAUCCACACAC____GGAGCAACUAUCCCAUGUGCUCGUCUAUCCCAAAAGGUUGCGGCU ..............((((.(((((((((.((((((.............)))...........(((((.(........))))))......))).))))))))))))) (-26.78 = -26.62 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:09:36 2011