| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,421,205 – 8,421,299 |
| Length | 94 |
| Max. P | 0.625183 |
| Location | 8,421,205 – 8,421,299 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 76.25 |
| Shannon entropy | 0.35945 |
| G+C content | 0.46575 |
| Mean single sequence MFE | -22.03 |
| Consensus MFE | -13.75 |
| Energy contribution | -14.00 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.625183 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8421205 94 + 27905053 GCUUCUUCCUCUACUUUCCCCCC-CGUAUUCUGUUCUUGGUAGAUCCGAAGCAGAAAAAAGGGAAACAGAACCAGUACCAGUACAAGAAUCGCAA------------ (((((((..(((..((((((...-....(((((((.((((.....)))))))))))....)))))).)))....(((....))))))))..))..------------ ( -21.50, z-score = -1.75, R) >droSim1.chr3R 14512424 94 - 27517382 UCUUCUACUCUUAUCCCCCGCCCGCGAAUUCUGUUCUUGGUAAAUCCGAAGCAGAAAAA-GGGAAACAGUACCAGUACCAGUACAAGAAUCGCAA------------ ((((.((((....((((.((....))..(((((((.((((.....)))))))))))...-))))....(((....))).)))).)))).......------------ ( -22.10, z-score = -2.26, R) >droSec1.super_0 7554782 89 - 21120651 -----UCUUCUUACCCCCCGCCCGCGAAUUCUGUUCUUGGUAAAUCCGAAGCAGAAAAA-GGGAAACAGUACCAGUACCAGUACAAGAAUCGCAA------------ -----..(((((.(((..((....))..(((((((.((((.....)))))))))))...-))).....((((........)))))))))......------------ ( -20.80, z-score = -2.17, R) >droYak2.chr3R 12707079 105 + 28832112 GCUCCUUCUUCUACUUUUCCCCC-CGAAUUCGGUUCUUGGGGAAUCCGAAGCAGAAAAU-GGGAAACAGAACCAGUACCAGUACUACUACCAGAACCAGAAUCGCAA ((((((..((((.((((((((((-((....))).....)))))....)))).))))...-)))).........((((....))))..................)).. ( -23.70, z-score = -0.37, R) >consensus GCUUCUUCUCCUACCCCCCCCCC_CGAAUUCUGUUCUUGGUAAAUCCGAAGCAGAAAAA_GGGAAACAGAACCAGUACCAGUACAAGAAUCGCAA____________ ....................(((.....(((((((.((((.....)))))))))))....)))...........(((....)))....................... (-13.75 = -14.00 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:09:33 2011