| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,418,096 – 8,418,191 |
| Length | 95 |
| Max. P | 0.850924 |
| Location | 8,418,096 – 8,418,191 |
|---|---|
| Length | 95 |
| Sequences | 9 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 65.00 |
| Shannon entropy | 0.68554 |
| G+C content | 0.51752 |
| Mean single sequence MFE | -33.24 |
| Consensus MFE | -11.26 |
| Energy contribution | -10.95 |
| Covariance contribution | -0.31 |
| Combinations/Pair | 1.67 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.850924 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8418096 95 + 27905053 -------UUAUAUGUGUGUUUGCUGGAACGGCCUGCGGUUAUUUGCCGAUUUAACGGGUAUUUCCGAUACAAGCCGCAAGCCAGCUUCGCCACUCGAAGCUC------------ -------..........((((....))))(((.(((((((.....(((......)))(((((...))))).))))))).)))(((((((.....))))))).------------ ( -31.00, z-score = -1.71, R) >droAna3.scaffold_12911 3349778 101 + 5364042 GUGUAGGGUGUG-GGGUGUGUGGUUGAUCGGCUUGCGGUUAUUUGCCGCUUUAACGUGUAUUUCCGAUACAUGCCGCAAGCCAUCGCCGCCACGCGAAACUC------------ .......(((((-(((((.((((((...((((..(((((.....)))))......(((((((...)))))))))))..)))))))))).)))))).......------------ ( -43.00, z-score = -2.78, R) >droSim1.chr3R 14509342 95 - 27517382 -------UUAUAUGUGUGUUUGUUGGAUCGGCCUGCGGUUAUUUGCCGAUUUAACGGGUAUUUCCGAUACAAGCCGCAAGCCAGCUUCGCCACUCGAAGCUC------------ -------.....((((.((((((((((...(((((((((.....))))......)))))...))))..))))))))))....(((((((.....))))))).------------ ( -32.50, z-score = -2.39, R) >droSec1.super_0 7551704 95 - 21120651 -------UUAUAUGUGUGUUUGUUGGAUCGGCCUGCGGUUAUUUGCCGAUUUAACGGGUAUUUCCGAUACAAGCCGCAAGCCAGCUUCGCCACUCGAAGCUC------------ -------.....((((.((((((((((...(((((((((.....))))......)))))...))))..))))))))))....(((((((.....))))))).------------ ( -32.50, z-score = -2.39, R) >droYak2.chr3R 12703866 95 + 28832112 -------UUAUAUGUGUGUUUGCUGGAUCGGCCUGCGGUUAUUUGCCGAUUUAACGGGUAUUUCCGAUACAAGCCGCAAGCCAGCUUCGCCACUCGAAGCUC------------ -------.....((((.(((((.(((((((((............))))))))).((((....))))...)))))))))....(((((((.....))))))).------------ ( -30.80, z-score = -1.62, R) >droEre2.scaffold_4770 4512394 101 - 17746568 -UUAUACUUGUAUGUGUGUUUGCUGGAUCGGCCUGCGGUUAUUUGCCGAUUUAACGGGUAUUUCCGAUACAAGCCGCAAGCCAGCUUCGCCACUCGAAGCUC------------ -.(((((......)))))...........(((.(((((((.....(((......)))(((((...))))).))))))).)))(((((((.....))))))).------------ ( -32.70, z-score = -1.87, R) >droMoj3.scaffold_6540 12426203 88 + 34148556 -----------------AGGCGCGUG--CGGCAUGUGGUUG-GAUCUGUUUUAUCUUCAAUUUCCGAUACAUGC-AUGCCGCCACGCCACAGCUCACACCUCGCCCGCC----- -----------------.((((((((--((((((((.((((-((..((.........))...))))))....))-)))))).)))))....((.........))..)))----- ( -31.80, z-score = -2.21, R) >droVir3.scaffold_12855 9620615 104 - 10161210 -------AGGCGCGUGCGGGCGUUGAA-CGGCUUGUGGUUGAGUUGUGUUUAAGCUUGAAUUUCCGAUACAUGCCGCGACUCAUCGAUGCAACUCACACCU-CUAUACGGCAA- -------..((.(((((((((......-..))))))((((((((((((((......(((...((((........)).)).)))..))))))))))).))).-....)))))..- ( -27.40, z-score = 1.28, R) >droGri2.scaffold_14906 12514580 106 - 14172833 ------AGGGGGCGAGGCGUUAAGCGG-UGGUUUGCGGUUGUGCUUCGCUUAAACUUGAAUUUCAUAUAAAUGCCGCGAGCCAUCAAUGUAGCUCGCACCU-GCUUACAGACAG ------..((((((((((.....))((-(((((((((((((((.((((........))))...)))).....))))))))))))).......))))).)))-............ ( -37.50, z-score = -1.65, R) >consensus _______UUAUAUGUGUGUUUGCUGGAUCGGCCUGCGGUUAUUUGCCGAUUUAACGGGUAUUUCCGAUACAAGCCGCAAGCCAGCUUCGCCACUCGAAGCUC____________ .............................(((.((((((.................................)))))).)))................................ (-11.26 = -10.95 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:09:30 2011