| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,415,519 – 8,415,609 |
| Length | 90 |
| Max. P | 0.577134 |
| Location | 8,415,519 – 8,415,609 |
|---|---|
| Length | 90 |
| Sequences | 8 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 57.70 |
| Shannon entropy | 0.74574 |
| G+C content | 0.46104 |
| Mean single sequence MFE | -21.50 |
| Consensus MFE | -6.07 |
| Energy contribution | -6.14 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.67 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.28 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.577134 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8415519 90 - 27905053 -------------AAAGAAUAACACGACAGGCUCAACACCUGAGCAUUGAGCAGUAAAUGCGCUUUGCUAUGCCAUUCCUUUUGCCUCUCCGCCUGUCUGCCU -------------............(((((((..........((((..(.(((.....))).)..))))..((.(......).))......)))))))..... ( -21.90, z-score = -1.36, R) >droAna3.scaffold_12911 3347212 78 - 5364042 -------------AAAGAACAACACGACAGGCUCAACACCUGAACAGUGAGCAGCAAAUGCGCUUUGCUCUGCCAUUCCGUUUGCCUGCCU------------ -------------.........(((..((((.......))))....))).((((((((((.((........)).....)))))).))))..------------ ( -17.40, z-score = 0.09, R) >dp4.chr2 2523653 91 - 30794189 AACAGUCCCAAGUGGAGCGAAGAAUCACAGGCUCAACACCUGGCCAUUGAGCACUAAAUGCGCUCUGGCACGGCAUUCCGUUUGCCCUCCC------------ .............((((..........((((.......))))((((..((((.(.....).))))))))..((((.......)))))))).------------ ( -25.80, z-score = -0.50, R) >droPer1.super_7 2692695 91 - 4445127 AACAGUCCCAAGUGGAGCGAAGAAUCACAGGCUCAACACCUGGCCAUUGAGCACUAAAUGCGCUCUGGCUCGGCAUUCCGUUUGCCCUCCC------------ .............((((.((.......((((.......))))((((..((((.(.....).))))))))))((((.......)))))))).------------ ( -25.90, z-score = -0.49, R) >droWil1.scaffold_181130 2226801 70 - 16660200 -------------AAAGAAAAACACUGGUAUCUCAACACCUGAGAAUUGAGCGCUAAAUGCGCUUUCCAUUU---UUUGGUUGCCU----------------- -------------.............(((((((((.....)))))...((((((.....)))))).(((...---..))).)))).----------------- ( -18.20, z-score = -2.51, R) >droMoj3.scaffold_6540 12423252 74 - 34148556 ----------AAAAAAAACUAACUGAGUGAGUUUAACACCUGAGCAUUGAGCAGAAAAUGCGCUUUGCUUGUGGAUUCAGUUGG------------------- ----------........((((((((((..(.....).((((((((..(.(((.....))).)..)))))).))))))))))))------------------- ( -22.30, z-score = -3.06, R) >droVir3.scaffold_12855 9616819 70 + 10161210 --------------AAAAAUAACUGAGUGAGUUUAACACCUGGGCAUUGAGCAGAAAAUGCGCUUUGGUUGUGGAUUCAGUUGG------------------- --------------........(..(.((((((((..(((.(.(((((........))))).)...)))..)))))))).)..)------------------- ( -20.40, z-score = -2.50, R) >droGri2.scaffold_14906 12511060 89 + 14172833 --AAAAAAUAAAUACGAAAAAAUAGAGUGAGUUUAGCACCAGAGCAUUGAGUAGAAAAUGCGCUUUGCCUGUGGAUUCAUUUGGGUUGUGU------------ --.........((((((.......(((((((((((....(((.(((..(.(((.....))).)..)))))))))))))))))...))))))------------ ( -20.10, z-score = -1.83, R) >consensus _____________AAAGAAAAACACAACAAGCUCAACACCUGAGCAUUGAGCAGUAAAUGCGCUUUGCUUGGGCAUUCCGUUGGCC___C_____________ .........................................(((((..(.(((.....))).)..)))))................................. ( -6.07 = -6.14 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:09:30 2011