| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,403,569 – 8,403,664 |
| Length | 95 |
| Max. P | 0.906317 |
| Location | 8,403,569 – 8,403,664 |
|---|---|
| Length | 95 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.95 |
| Shannon entropy | 0.34684 |
| G+C content | 0.45798 |
| Mean single sequence MFE | -25.68 |
| Consensus MFE | -16.00 |
| Energy contribution | -16.00 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.19 |
| SVM RNA-class probability | 0.906317 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8403569 95 - 27905053 -----------------GUCGAGCUGGGG-AACCGACAGGCGACAGCCAUAACGGUGACAGCGAUAAAUUAAAUGGUAAUUUGAAUUUACCGUUAAGUGACACGAACAGGCAA------- -----------------(((..((((...-.((((...(((....)))....))))..)))).....(((.((((((((.......)))))))).))))))............------- ( -27.30, z-score = -2.80, R) >droSim1.chr3R 14493432 95 + 27517382 -----------------GUCGAGCUGGGG-AACCGACAGGCGACAGCCAUAACGGUGACAGCGAUAAAUUAAAUGGUAAUUUGAAUUUACCGUUAAGUGACACGAACAGGCAA------- -----------------(((..((((...-.((((...(((....)))....))))..)))).....(((.((((((((.......)))))))).))))))............------- ( -27.30, z-score = -2.80, R) >droSec1.super_0 7537773 95 + 21120651 -----------------GUCGAGCUGGGG-AACCGACAGGCGACAGCCAUAACGGUGACAGCGAUAAAUUAAAUGGUAAUUUGAAUUUACCGUUAAGUGACACGAACAGGCAA------- -----------------(((..((((...-.((((...(((....)))....))))..)))).....(((.((((((((.......)))))))).))))))............------- ( -27.30, z-score = -2.80, R) >droYak2.chr3R 12689693 95 - 28832112 -----------------GUCGAGCUGGGG-AACCGACAGGCGACAGCCAUAACGGUGACAGCGAUAAAUUAAAUGGUAAUUUGAAUUUACCGUUAAGUGACACGAACAGGCAA------- -----------------(((..((((...-.((((...(((....)))....))))..)))).....(((.((((((((.......)))))))).))))))............------- ( -27.30, z-score = -2.80, R) >droEre2.scaffold_4770 4498237 96 + 17746568 ----------------CGUCGAGCUGGGG-AACCGACAGGCGACAGCCAUAACGGUGACAGCGAUAAAUUAAAUGGUAAUUUGAAUUUACCGUUAAGUGACACGAACAGGCAA------- ----------------.(((..((((...-.((((...(((....)))....))))..)))).....(((.((((((((.......)))))))).))))))............------- ( -27.60, z-score = -2.64, R) >droAna3.scaffold_12911 3335211 96 - 5364042 -----------------AUGGAGGAAAGGACACUGACAGGCGACAGCCAUAACGGUGACAGCGAUAAAUUAAAUGGUAAUUUGAAUUUACCGUUAAGUGACACGAACAGAGAA------- -----------------.............((((....(((....))).(((((((((......(((((((.....)))))))...)))))))))))))..............------- ( -19.80, z-score = -2.17, R) >dp4.chr2 2511913 119 - 30794189 GAGGAGGGGCAGCGCCAGUUGGAGACAGG-CCCUGACAGGCGACAGCCAUAACGGUGACAGCGAUAAAUUAAAUGGUAAUUUGAAUUUACCGUUAAGUGACACGAACAGGCAACUUCACG ..(..(((((..(.((....)).)....)-))))..).(((....))).(((((((((......(((((((.....)))))))...))))))))).((((.......((....)))))). ( -34.01, z-score = -2.17, R) >droPer1.super_7 2681110 119 - 4445127 GAGGAGGGGCAGCGCCAGUUGGGGACAGG-CCCUGACAGGCGACAGCCAUAACGGUGACAGCGAUAAAUUAAAUGGUAAUUUGAAUUUACCGUUAAGUGACACGAACAGGCAACUUCACG ..((((..((.(((((.((..(((.....-)))..)).(((....))).....)))).)..((....(((.((((((((.......)))))))).)))....)).....))..))))... ( -38.80, z-score = -3.31, R) >droWil1.scaffold_181130 2212641 82 - 16660200 -------------------------------CAUGACAGGCGACAGCCAUAACGGUGACAGCGAUAAAUUAAAUGGUAAUUUGAAUUUACCGUUAAGUGACACGAACAGGCAA------- -------------------------------.......(....).(((.....(....)..((....(((.((((((((.......)))))))).)))....))....)))..------- ( -16.60, z-score = -1.35, R) >droVir3.scaffold_12855 9603298 95 + 10161210 -----------------GCAGCAAGGAUA-CUACGACAGGCGACAGCCAUAACGGUGACAGCGAUAAAUUAAAUGUUAAUUUGAAUUUACCGUUCAGUGACACGAACAGACGG------- -----------------............-...((...(((....)))....((((.((((((.((((((((((....))))).))))).))))..)).)).))......)).------- ( -17.20, z-score = -0.53, R) >droMoj3.scaffold_6540 12409166 95 - 34148556 -----------------GCUGCAAGGAUG-CCAUGACAGGCGACAGCCAUAACGGUGACAGCGAUAAAUUAAAUGUUAAUUUGAAUUUACCGUUCAGUGACACGAACAGGCAA------- -----------------..........((-((.((...(((....)))....((((.((((((.((((((((((....))))).))))).))))..)).)).))..)))))).------- ( -22.80, z-score = -1.20, R) >droGri2.scaffold_14906 12498944 95 + 14172833 -----------------GCAGAAUGGAUG-GCAUGACAGGCGACAGCCAUAACGGUGACAGCGAUAAAUUAAAUGUUAAUUUGAAUUUACCGUUCAGUGACACGAACGGACGA------- -----------------(((.(((..((.-((......(((....))).....(....).)).))..)))...))).............((((((........))))))....------- ( -22.10, z-score = -1.51, R) >consensus _________________GUCGAGCUGAGG_AACCGACAGGCGACAGCCAUAACGGUGACAGCGAUAAAUUAAAUGGUAAUUUGAAUUUACCGUUAAGUGACACGAACAGGCAA_______ ......................................(((....)))....((((.((((((.((((((((((....))))).))))).))))..)).)).))................ (-16.00 = -16.00 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:09:29 2011