| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,400,802 – 8,400,919 |
| Length | 117 |
| Max. P | 0.549789 |
| Location | 8,400,802 – 8,400,919 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 82.27 |
| Shannon entropy | 0.31435 |
| G+C content | 0.35737 |
| Mean single sequence MFE | -30.76 |
| Consensus MFE | -16.84 |
| Energy contribution | -17.56 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.549789 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8400802 117 + 27905053 GGCCUACAGUGAGCUCAUGUGCAAGUGCACAAGGAGAAACAAGUGCAUUA-UGCAUGAUUGCAUUU-AUAUGAUUGGUUUUUAUUUGUUUACUUUAUUGAAAACAAGAGAGGUCGCUGC ......((((((.(((.(((((....)))))...((((((.(((.(((.(-((((....)))))..-..)))))).)))))).(((((((.(......).))))))).))).)))))). ( -34.20, z-score = -2.14, R) >droEre2.scaffold_4770 4495359 110 - 17746568 GGCCUAAAGUGAACUCAUGUGCAAGUGCACAAGAAGAAAAACGUGCAACUAAAUGGAUGUUCAUUUUAUUUGAUUGC-UUUUAUUUAUUCAUUUUAUUGAAAACAAACUGC-------- ....(((((((((.((.(((((....))))).))..........((((.((((((((.......)))))))).))))-.........)))))))))...............-------- ( -21.90, z-score = -0.78, R) >droYak2.chr3R 12686777 119 + 28832112 GGCCUAAAGUGAACUCAUGUGCAAGUGCACAAGAAGAAAAACGUGGAAUAAAAUGGAUGUUCAUUUUAUUUGAUUGCCUUUUAUUUGUUCAUUUUAAUGAACACAAGGCACGCCGCUGC (((.((((((((((((.(((((....)))))..........(((........))))).))))))))))......((((((.....(((((((....))))))).)))))).)))..... ( -34.70, z-score = -2.92, R) >droSec1.super_0 7534986 119 - 21120651 GGCCUACAGUGAGCUCAUGUGCAAGUGCACAAGAAGAAAAAAGUGGAAUAAUAUUAGUGUUCAUUUUAUAUGAUUGCUUUUAAUUUGUUUACUUUAUUGAAAACAAGAGAGGUCGCUGC ......((((((.(((.(((((....)))))........((((((((....((..(((..((((.....))))..)))..)).....)))))))).............))).)))))). ( -31.00, z-score = -2.18, R) >droSim1.chr3R 14490217 119 - 27517382 GGCCUACAGUGAGCUCAUGUGCAAGUGCACAAGGAGAAAAAAGUGGAAUAAUAUUAGUGUUCAUUUUAUAUGAUUGCUUUUUAUUUGUUUACUUUAUUGAAAACAAGGGAGGUCGCUGC ......((((((.(((.(((((....)))))........((((((((..((((..(((..((((.....))))..)))...))))..)))))))).............))).)))))). ( -32.00, z-score = -2.25, R) >consensus GGCCUACAGUGAGCUCAUGUGCAAGUGCACAAGAAGAAAAAAGUGGAAUAAUAUGAGUGUUCAUUUUAUAUGAUUGCUUUUUAUUUGUUUACUUUAUUGAAAACAAGAGAGGUCGCUGC (((((..(((((((((.(((((....))))).)).....((((((((............))))))))...................)))))))...(((....)))...)))))..... (-16.84 = -17.56 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:09:28 2011