| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,392,715 – 8,392,815 |
| Length | 100 |
| Max. P | 0.845708 |
| Location | 8,392,715 – 8,392,815 |
|---|---|
| Length | 100 |
| Sequences | 12 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 72.49 |
| Shannon entropy | 0.52943 |
| G+C content | 0.50884 |
| Mean single sequence MFE | -33.49 |
| Consensus MFE | -14.12 |
| Energy contribution | -14.97 |
| Covariance contribution | 0.85 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.89 |
| SVM RNA-class probability | 0.845708 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8392715 100 - 27905053 ---UGGCAAUAGA-GUCCUUCCGUGGGUUCGUCAAUCAGC----------GCAACGCUCGCAGAACUUC-UGACAGUUU---GCUGUCAGAGGCAGCACAAGCUGGAAAUGACAAACG ---........((-..((......))..))((((.(((((----------((.......))....((((-((((((...---.))))))))))........)))))...))))..... ( -33.90, z-score = -1.70, R) >droSim1.chr3R 14482268 100 + 27517382 ---UGGCAAUAGA-GUCCUUCCGUGGGUUCGUCAAUCAGC----------GCAACGCUCGCAGAACUUC-UGACAGUUU---GCUGUCAGAGGCAGCACAAGCUGGAAAUGACAAACG ---........((-..((......))..))((((.(((((----------((.......))....((((-((((((...---.))))))))))........)))))...))))..... ( -33.90, z-score = -1.70, R) >droSec1.super_0 7526993 90 + 21120651 ---UGGCAAUAGA-GUCCUUCCGUAGGUUCGUCAAUCAGC----------GCAAUGCUCGCCGAACUUC-UGACAGUUU-------------GCAGCACAAGCUGGAAAUGACAAACG ---........((-(.(((.....))))))((((.(((((----------....((((.((.(((((..-....)))))-------------))))))...)))))...))))..... ( -23.70, z-score = -0.51, R) >droYak2.chr3R 12678530 100 - 28832112 ---UGGCAAUAGA-GUCCUUCCGUGGGUUCGUCAAUCAGC----------GCAACGCUCGCAGAACUUC-UGACAGUUU---GCUGUCAGAGGCAGCACAAGCUGGAAAUGACAAACG ---........((-..((......))..))((((.(((((----------((.......))....((((-((((((...---.))))))))))........)))))...))))..... ( -33.90, z-score = -1.70, R) >droEre2.scaffold_4770 4487118 100 + 17746568 ---UGGCAAUAGA-GUCCUUCCGUGGGUUCGUCAAUCAGC----------GCAACGCUCGCAGAACUUC-UGACAGUUU---GCUGUCAGAGGCAGCGCAAGCUGGAAAUGACAAACG ---........((-..((......))..))((((....((----------(.......)))....((((-((((((...---.))))))))))((((....))))....))))..... ( -37.20, z-score = -2.31, R) >droAna3.scaffold_12911 3324520 104 - 5364042 UCCUGGCAAAAGAGGUACAUCCGUGCGUUCGUCAAUCAGC----------GCCAUGUUCGCCGAACUUC-UGACAGUUU---GCUGUCAGAGGCAGCGCAGACUGGAAAUGACAAACG ...((((....((.((((....)))).)).)))).(((..----------.(((.((..(((...((((-((((((...---.))))))))))..).))..)))))...)))...... ( -33.40, z-score = -1.10, R) >dp4.chr2 2501279 101 - 30794189 -----------UCCA--CAUCCGUGCGUUCGUCAAUCAGUGUUGCGUCGCUGAGCGCUCUGCGAAGUUC-UGACAGUUU---GCUGUCAGAGGCAGCGAAGGCUGGAAAUGACAAACG -----------..((--(....)))((((.((((.((((((((((.((((.((....)).))))..(((-((((((...---.))))))))))))))....)))))...)))).)))) ( -37.30, z-score = -1.33, R) >droPer1.super_7 2669272 101 - 4445127 -----------UUCA--CAUCCGUGCGUUCGUCAAUCAGUGUUGCGCCGCGGAGCGCUCUGCGAAGUUC-UGACAGUUU---GCUGUCAGAGGCAGCGAAGGCUGGAAAUGACAAACG -----------..((--(....)))((((.((((.(((((.((((((((((((....))))).....((-((((((...---.))))))))))).))))..)))))...)))).)))) ( -41.90, z-score = -2.39, R) >droWil1.scaffold_181130 2203767 96 - 16660200 -----------UGUCUAUGUCUGUGUGUUUGUCAAUCAAA----------GCUCAGCUUGCAGAACUUCUUGGCAGUUGCGGGCUGUCACAGACAGCAAAUGCU-AAAAUGACAAACG -----------((((...(((((((.((((........))----------)).((((((((((..((....))...)))))))))).)))))))(((....)))-.....)))).... ( -31.50, z-score = -2.16, R) >droMoj3.scaffold_6540 12398633 95 - 34148556 ----------UUCAAGUCAAGCGUGCGUUCGUCAAUCAGG--------UUGGCGCGCUCGCCAAACUUC-UGGCAGCUG---GCUGUCAGAAGCAGCAAAUGCU-CAAAUGACAAACG ----------.....((((.(((.(((..(((((((...)--------))))))))).)))....((((-((((((...---.)))))))))).(((....)))-....))))..... ( -36.00, z-score = -2.96, R) >droVir3.scaffold_12855 9593527 93 + 10161210 ----------AUCUAGUCAAGCGUGCGUUCGUCAAUCAGC----------GAUGCGCUCGCCAAACUUC-UGGCAGUUU---GCUGUCAGAAACAGCAAAUGCU-GAAAUCAGAAACG ----------.(((......(((.((((((((......))----------)).)))).))).....(((-((((((...---.))))))))).((((....)))-).....))).... ( -33.00, z-score = -3.07, R) >droGri2.scaffold_14906 12488863 93 + 14172833 ----------AUCUAGUCAAGCGUACAUUCGUCAAUCAGA----------GAUGCGUUCGCUAAACUUC-UGGCAGCUU---GCUGUCAGAAACAGCAAAUACU-GAAAUGACAAACG ----------.....((((((((.((...((((.......----------)))).)).))))....(((-((((((...---.))))))))).(((......))-)...))))..... ( -26.20, z-score = -2.28, R) >consensus __________AGA_GUCCAUCCGUGCGUUCGUCAAUCAGC__________GCAACGCUCGCCGAACUUC_UGACAGUUU___GCUGUCAGAGGCAGCAAAAGCUGGAAAUGACAAACG ..........................(((.((((................................(((.(((((((.....))))))))))..(((....))).....)))).))). (-14.12 = -14.97 + 0.85)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:09:27 2011