| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,371,486 – 8,371,539 |
| Length | 53 |
| Max. P | 0.693440 |
| Location | 8,371,486 – 8,371,539 |
|---|---|
| Length | 53 |
| Sequences | 6 |
| Columns | 53 |
| Reading direction | forward |
| Mean pairwise identity | 82.89 |
| Shannon entropy | 0.33501 |
| G+C content | 0.35808 |
| Mean single sequence MFE | -11.76 |
| Consensus MFE | -6.98 |
| Energy contribution | -8.18 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.693440 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3R 8371486 53 + 27905053 GCACAAAGUUUAGAAAGCUGAGUAAAAAACUUUCUUCAAUUCAGAGAACGAAC .......((((......((((((...............)))))).)))).... ( -4.16, z-score = 1.03, R) >droSim1.chr3R 14460632 53 - 27517382 GCACAAAGUUUAGAAAGCUGAGUAAAAAACUUUGUGCAAUUUACAGAACGAAC (((((((((((...............)))))))))))................ ( -12.96, z-score = -2.97, R) >droSec1.super_0 7505612 52 - 21120651 GCACAAAGUUUAGAAAGCUGAGUAAAAAACUUUGUGCACUUUACAGA-CGAAC (((((((((((...............)))))))))))..........-..... ( -12.96, z-score = -2.40, R) >droYak2.chr3R 12656504 52 + 28832112 GCACAAAGUUUAGAAAGCUGAGUAAAAA-CUUUGUGCAAUUCACAGAACGAAC (((((((((((..............)))-))))))))................ ( -13.04, z-score = -2.68, R) >droEre2.scaffold_4770 4465175 53 - 17746568 GCACAAAGCUUAGAAAGCUGAGUAAAAAACUUUGUGCAAUUUACAGAACGAAC (((((((((((((....))))).......))))))))................ ( -13.01, z-score = -2.88, R) >droVir3.scaffold_12855 9565296 50 - 10161210 GCAUGCAGUUUUGCAAUUUAUGCAAAAAAGUUU--GCAAUGC-UAGAGCAGAC (((.((..(((((((.....)))))))..)).)--))..(((-....)))... ( -14.40, z-score = -1.79, R) >consensus GCACAAAGUUUAGAAAGCUGAGUAAAAAACUUUGUGCAAUUCACAGAACGAAC (((((((((((...............)))))))))))................ ( -6.98 = -8.18 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:09:24 2011