| Sequence ID | dm3.chr2L |
|---|---|
| Location | 7,187,038 – 7,187,128 |
| Length | 90 |
| Max. P | 0.755765 |
| Location | 7,187,038 – 7,187,128 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 67.22 |
| Shannon entropy | 0.63122 |
| G+C content | 0.46101 |
| Mean single sequence MFE | -21.98 |
| Consensus MFE | -8.58 |
| Energy contribution | -9.50 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.755765 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 7187038 90 - 23011544 AUAGUGAAGUAGAUGAGGAUGUAAGUCUUCCAUCAAACGCUGUAAGCUGCGUCCUGAAUGAGCAGAGACAGGAUGGAAGCCAGAAUCCAC------ ................((((....(.((((((((.....((((...((((.((......))))))..)))))))))))))....))))..------ ( -26.00, z-score = -2.30, R) >droSim1.chr2L 6976921 96 - 22036055 AUAGUGAAGUAGAGGAGGAUGUAAGUCUUCCAUCAAACGCUGUAACCUGCGUCCUGAAUGAGCAGAGACAGGAGGAAACCCAGAACCAGAUACCAC ((((((.....(((((((((....))))))).))...))))))...(((.((((((......))).))).((.(....))).....)))....... ( -25.80, z-score = -2.20, R) >droSec1.super_3 2710666 96 - 7220098 AUAGUGAAGUAGAGGAGGAUGUAAGUCUUCCAUCAAACGCUGUAACCUGCGUCCUGAAUGAGCAGAGACAUGAGGAAGCCCAGAACCAGAUACCAC ((((((.....(((((((((....))))))).))...))))))...(((.((((((......))).)))....((....)).....)))....... ( -22.40, z-score = -1.15, R) >droYak2.chr2L 16608083 96 + 22324452 CUAGCGAGGAAGAAGAAGAUGUUAAUCUUCCAUCAAAUGCUGUAAGCUGCGUCCUGAAUGAGCAGAGACAGGAGGAAACCCAGAACGAGAAUCCCC ...((((((((((..((....))..)))))).))....((.....)).))((((((......))).))).((.(....)))............... ( -21.40, z-score = -0.89, R) >droEre2.scaffold_4929 16103902 96 - 26641161 CUAGCGAAGAAAACGAAGAUGUGAAUCUUCCAUCAAACACUGUAAGCUGCGUCCUGAAUGAGCGGCGACAGGAGGAAACUCAGAACGAGAAUUCCC ....((........((((((....))))))..((.....((((..(((((.((......))))))).))))(((....))).)).))......... ( -24.90, z-score = -1.59, R) >droAna3.scaffold_12943 1039660 81 + 5039921 ------AUCAAAAAAGCGACAAGGAUCUAGGAAGAAAUCUUCUGCCCCCAGACCAAGAUGAAAGUGAUCCAAAAAAUAGUCAAAAUC--------- ------................(((((..(((((....)))))..............((....))))))).................--------- ( -11.40, z-score = -0.71, R) >consensus AUAGUGAAGAAGAAGAGGAUGUAAAUCUUCCAUCAAACGCUGUAACCUGCGUCCUGAAUGAGCAGAGACAGGAGGAAACCCAGAACCAGA__CC_C ..............((((((....)))))).........((((...((((...........))))..))))......................... ( -8.58 = -9.50 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:23:08 2011