| Sequence ID | dm3.chr2L |
|---|---|
| Location | 674,882 – 674,990 |
| Length | 108 |
| Max. P | 0.656787 |
| Location | 674,882 – 674,990 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 95.92 |
| Shannon entropy | 0.06938 |
| G+C content | 0.36250 |
| Mean single sequence MFE | -20.09 |
| Consensus MFE | -18.24 |
| Energy contribution | -18.28 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.656787 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 674882 108 - 23011544 UAGCUUGUGGGUGAGUUCUUAUUAUUUUAAGAAGAAGCCAAGAGAAACAGAAAAACAAACUCGACCCCAAUAAGUCAUUUAGUCUCGAAAUUCAUCCAGCAAUUUUAG ..(((...(((((((((((((......))))).........((((....((.........))(((........)))......))))...)))))))))))........ ( -19.70, z-score = -1.25, R) >droSim1.chr2L 685658 108 - 22036055 UAGCUUGUGGGUGAGUUCUUAUUAUUUUAAGAAGAAGCCAAGAGAAACAGAAAAACAAACUCGACCCCAAUAAGUCAUUUAGUCUCGAAAUUCAUCCAGCAAUUUUAG ..(((...(((((((((((((......))))).........((((....((.........))(((........)))......))))...)))))))))))........ ( -19.70, z-score = -1.25, R) >droSec1.super_14 656359 108 - 2068291 UAGCUUGUGGGUGAGUUCUUAUUAUUUUAAGAAGAAGCCAAGAGAAACAGAAAAACAAACUCGACCCCAAUAAGUCAGUUAGUCUCGAAAUUCAUCCAGCAAUUUUAG ..(((...(((((((((((((......))))).........((((............((((.(((........)))))))..))))...)))))))))))........ ( -20.74, z-score = -1.55, R) >droYak2.chr2L 665994 107 - 22324452 UAGCUCGUGGGUGAGUUCUUAUUAUUAUAAGAAGUAGCCAAGAGAAACAGAAAAACAAACCCGACCCCAAUAAGUCAUUUAGUCUCG-AAUUCAUCCAGCAAUUUUAG ..(((...((((((((((...(((((......)))))....((((....(.....)......(((........)))......)))))-))))))))))))........ ( -20.00, z-score = -2.22, R) >droEre2.scaffold_4929 737269 107 - 26641161 UAGCUCGUGGGUGAGUUCUUAUUAUUAUAAGAAGUAGCCAAGAGAAGCAGAAAAACAAACUCGACCCCAAUACGUCAUUUAGUCUUG-AAUUCAUCCAGCAAUUUUAG ..(((...((((((((((((((....))))))......(((((......((.........))(((........)))......)))))-.)))))))))))........ ( -20.30, z-score = -1.36, R) >consensus UAGCUUGUGGGUGAGUUCUUAUUAUUUUAAGAAGAAGCCAAGAGAAACAGAAAAACAAACUCGACCCCAAUAAGUCAUUUAGUCUCGAAAUUCAUCCAGCAAUUUUAG ..(((...(((((((((((((......))))).........((((....((.........))(((........)))......))))...)))))))))))........ (-18.24 = -18.28 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:06:37 2011