| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,369,035 – 8,369,119 |
| Length | 84 |
| Max. P | 0.750232 |
| Location | 8,369,035 – 8,369,119 |
|---|---|
| Length | 84 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 79.03 |
| Shannon entropy | 0.36554 |
| G+C content | 0.47528 |
| Mean single sequence MFE | -17.28 |
| Consensus MFE | -7.81 |
| Energy contribution | -8.39 |
| Covariance contribution | 0.58 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.44 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.750232 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8369035 84 - 27905053 AACUUUUCGGGCGACCCUCUUUU--------CCAGAGCUUCUUAAGUAUCCUUCAUUCGACAUGUUUACUUUGCACUCGCCCUACUCCCCCU------- ........((((((..((((...--------..))))......(((((..(.((....))...)..))))).....))))))..........------- ( -15.70, z-score = -2.79, R) >droAna3.scaffold_12911 3299663 91 - 5364042 AACUUUUGGGUCGCCCCUCGUUC--------GCAGAGCAGCUUAAGUAUCCUUCAUUCGACAUGUUUACUUUGCACUCGCCCUACUGGCUCUACCCUAC .......((((.(((....((..--------((.(((..((..(((((..(.((....))...)..))))).)).)))))...)).)))...))))... ( -18.00, z-score = -0.73, R) >droSim1.chr3R 14458047 84 + 27517382 AACUUUUCGGGCGACCCUCUUUU--------CCAGAGCUUCUUAAGUAUCCUUCAUUCGACAUGUUUACUUUGCACUCGCCCUACUCCCCCU------- ........((((((..((((...--------..))))......(((((..(.((....))...)..))))).....))))))..........------- ( -15.70, z-score = -2.79, R) >droEre2.scaffold_4770 4462793 84 + 17746568 AACUUUUCGGGCGACCCUCUCUU--------CCAGAGCUUCCUAAGUAUCCUUCAUUCGACAUGUUUACUUUGCACUCGCCCUACUCCCCCU------- ........((((((..((((...--------..))))......(((((..(.((....))...)..))))).....))))))..........------- ( -15.70, z-score = -2.67, R) >droYak2.chr3R 12654008 83 - 28832112 AACUUUUCGGGCGACCCUCUUUU---------CAGAGCUUCUUAAGUAUCCUUCAUUCGACAUGUUUACUUUGCACUCGCCCUACUCCCCCU------- ........((((((..((((...---------.))))......(((((..(.((....))...)..))))).....))))))..........------- ( -15.70, z-score = -2.79, R) >droWil1.scaffold_181130 2177936 92 - 16660200 AAUGCUUAGGGCAACCCUCGUUCAUUCAUACGUAUGUUAGCAGAAGUAUCCUUCAUUGCUUCUGUUUGCUUUGCACUCGGCUCAUUCUUCUU------- ...(((.((.((((....(((........)))...((.((((((((((........)))))))))).)).)))).)).)))...........------- ( -22.90, z-score = -2.87, R) >consensus AACUUUUCGGGCGACCCUCUUUU________CCAGAGCUUCUUAAGUAUCCUUCAUUCGACAUGUUUACUUUGCACUCGCCCUACUCCCCCU_______ ........((((((..(((...............)))......(((((..(............)..))))).....))))))................. ( -7.81 = -8.39 + 0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:09:24 2011