| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,364,917 – 8,365,010 |
| Length | 93 |
| Max. P | 0.941175 |
| Location | 8,364,917 – 8,365,010 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 84.50 |
| Shannon entropy | 0.24903 |
| G+C content | 0.31730 |
| Mean single sequence MFE | -22.06 |
| Consensus MFE | -15.89 |
| Energy contribution | -18.20 |
| Covariance contribution | 2.31 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.44 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.47 |
| SVM RNA-class probability | 0.941175 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8364917 93 + 27905053 GUAUUUUUCCUUGCAUAACAUAUUGUACCUUAAAUGUAAGUAAGUAGCUUACAUUUUGCGACUAAGAUGGUAUAUAAAUGUACGGAUCAUAGG .......(((.(((((.......((((((..((((((((((.....))))))))))............))))))...))))).)))....... ( -19.34, z-score = -1.26, R) >droSim1.chr3R 14452516 92 - 27517382 -GAUUUUUUCUUGCAUAACAUAUUGUACCUUAAAUGUAAGUAAGUAGCUUACAUUUUGCGACAUAGAAGGUAUAUAAAUGUAAGGAUCUUUGG -......(((((((((.......((((((((((((((((((.....))))))))))..........))))))))...)))))))))....... ( -22.80, z-score = -3.07, R) >droSec1.super_0 7499427 92 - 21120651 -GAUUUUUCCUUGCAUAACAUAUUGUACCUUAAAUGUAAGUAAGUAGCUUACAUUUUGCGACUAAGAAGGUAUAUAAAUGUAAGGAUCUUAGG -......(((((((((.......((((((((((((((((((.....))))))))))..........))))))))...)))))))))....... ( -25.70, z-score = -3.85, R) >droEre2.scaffold_4770 4458853 89 - 17746568 --AUAUUUUCU-GCAUACGAAAUAGUGGCCUCAAUGUAAGUAAGCAGCUUACAUGUAAGGACUAAGCAGGU-UAUAAAUGUACGGAUCAUAAG --.(((..(((-((.(((......))).(((..((((((((.....))))))))...))).....))))).-.)))................. ( -20.40, z-score = -1.57, R) >consensus _GAUUUUUCCUUGCAUAACAUAUUGUACCUUAAAUGUAAGUAAGUAGCUUACAUUUUGCGACUAAGAAGGUAUAUAAAUGUAAGGAUCAUAGG .......(((((((((.......((((((((((((((((((.....))))))))))..........))))))))...)))))))))....... (-15.89 = -18.20 + 2.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:09:23 2011