| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,357,488 – 8,357,590 |
| Length | 102 |
| Max. P | 0.902430 |
| Location | 8,357,488 – 8,357,590 |
|---|---|
| Length | 102 |
| Sequences | 7 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 72.11 |
| Shannon entropy | 0.49978 |
| G+C content | 0.48000 |
| Mean single sequence MFE | -27.84 |
| Consensus MFE | -15.07 |
| Energy contribution | -18.54 |
| Covariance contribution | 3.47 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.16 |
| SVM RNA-class probability | 0.902430 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8357488 102 + 27905053 UAUAAAUCCGGUGACGGACAGGUGGGCGACGCCUCCGUCAGCUUUGCAGCGAACUAAAGCUGCAAGUUUUUCCUCGUUUUUUUUUUUUUUUUUUGUUGGUUG .......(((.(((((((..((((.....))))))))))).)((((((((........))))))))...............................))... ( -30.50, z-score = -2.05, R) >droSim1.chr3R 14445025 98 - 27517382 UAUAAAUCCGGUGACGGACAGGUGGGCGACGCCUCCGUCAGCUUUGGAGCGAACUAAAGCUGCAAGUUUUCCUCGUUUUUUUCUUUUUUUUUUGGUUG---- ......((((....)))).(((..(((((((....))))((((((((......))))))))....)))..))).........................---- ( -26.50, z-score = -0.63, R) >droSec1.super_0 7491996 99 - 21120651 UAUAAAUCCGGUGACGGACAGGUUGGCGACGCCUCCGUCAGCUUUGCAGCGAACUAAAGCUGCAAGUUUUCCUCGUUUUUUUCUUUUUUUUUUUGUUUG--- ......((((....)))).(((..(((((((....))))....(((((((........))))))))))..)))..........................--- ( -28.70, z-score = -2.33, R) >droYak2.chr3R 12642223 89 + 28832112 UAUAAAUCCGGUGACGGACAGGUGGGCGACGCCUCCGUCAGCUUUGCAGCGAACUAAGGCUGCAAGUUUUUCCUCCUUUUCCUUUUUUG------------- ......((((....)))).(((.((((((((....)))).))((((((((........)))))))).....)).)))............------------- ( -30.00, z-score = -2.31, R) >droEre2.scaffold_4770 4451830 91 - 17746568 UAUAAAUCCGGUGACGGACAGGUGGGCGACGCCUCCGACAGCUUUGCAGCGAACUAAAGCUGCACUUUUUUUCUCCUCCCUUUUUUUUUUG----------- ......((((....)))).(((..((.((.((........))..((((((........)))))).......)).))..)))..........----------- ( -26.60, z-score = -2.21, R) >dp4.chr2 2465677 83 + 30794189 CAUAAAUCCGGUGACGGACAGGUGGGCGAGUCCUUCAACAGUUUCUGUGGAAGCCCAAGCUGAAACUUUUUCACUGCUGGCUG------------------- ......((((....))))(((.(((((...(((....((((...))))))).)))))(((((((.....))))..)))..)))------------------- ( -26.30, z-score = -1.07, R) >droPer1.super_7 2633569 83 + 4445127 CAUAAAUCCGGUGACGGACAGGUGGGCGAGUCCUUCAACAGUUUCUGUGGAAGCCCAAGCUGAAACUUUUUCACUGCUGGCUG------------------- ......((((....))))(((.(((((...(((....((((...))))))).)))))(((((((.....))))..)))..)))------------------- ( -26.30, z-score = -1.07, R) >consensus UAUAAAUCCGGUGACGGACAGGUGGGCGACGCCUCCGUCAGCUUUGCAGCGAACUAAAGCUGCAAGUUUUUCCCCGUUUUUUUUUUUUUU____________ ......((((....))))..((.((((...))))))..((((((((........))))))))........................................ (-15.07 = -18.54 + 3.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:09:20 2011