| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,352,435 – 8,352,521 |
| Length | 86 |
| Max. P | 0.788517 |
| Location | 8,352,435 – 8,352,521 |
|---|---|
| Length | 86 |
| Sequences | 5 |
| Columns | 87 |
| Reading direction | forward |
| Mean pairwise identity | 93.97 |
| Shannon entropy | 0.10649 |
| G+C content | 0.43458 |
| Mean single sequence MFE | -21.92 |
| Consensus MFE | -17.60 |
| Energy contribution | -18.28 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.788517 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8352435 86 + 27905053 GCAACUAUUUUUUUUUUCUGCCAGCAGGCAAUCAAUUGGCAUCCAAUUAACAUUUCGGUUGCAAUCGCAGCA-ACACUGCGUAUACG ((((((............((((....))))...((((((...))))))........))))))...(((((..-...)))))...... ( -22.70, z-score = -3.39, R) >droSim1.chr3R 14439932 86 - 27517382 GCAACUAUUUUUUUUUUCUGCCAGCAGGCAAUCAAUUGGCAUCCAAUUAACAUUUCGGUUGCAAUGCCAGCC-ACACUGCGUAUACG ((((((............((((....))))...((((((...))))))........)))))).(((((((..-...))).))))... ( -20.80, z-score = -2.08, R) >droSec1.super_0 7486975 85 - 21120651 GCAACUAUUUUUUUUU-CUGCCAGCAGGCAAUCAAUUGGCAUCCAAUUAACAUUUCGGUUGCAAUGCCAGCC-ACACUGCGUAUACG ((((((..........-.((((....))))...((((((...))))))........)))))).(((((((..-...))).))))... ( -20.80, z-score = -2.05, R) >droYak2.chr3R 12637044 84 + 28832112 GCAACUAUUUUUUUUU--UGCCAGCUGGCAAUCAAUUGGCAUCCAAUUAACAUUUCGGUUGCAGUGCCAGCC-ACACUGCGUAUACG ((((((.........(--((((....)))))..((((((...))))))........)))))).(((((((..-...))).))))... ( -22.20, z-score = -1.98, R) >droEre2.scaffold_4770 4446691 87 - 17746568 GCAACUAUUUUUUGUUUUUGCCUGCUGGCAAUCAAUUGGCAUCCAAUUAACAUUUCGGUUGCACUGGCAGCCCACACUGCGUAUACG ((((((......((((.(((((....)))))..((((((...))))))))))....))))))....((((......))))....... ( -23.10, z-score = -1.64, R) >consensus GCAACUAUUUUUUUUUUCUGCCAGCAGGCAAUCAAUUGGCAUCCAAUUAACAUUUCGGUUGCAAUGCCAGCC_ACACUGCGUAUACG ((((((............((((....))))...((((((...))))))........)))))).(((((((......))).))))... (-17.60 = -18.28 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:09:20 2011