| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,351,422 – 8,351,517 |
| Length | 95 |
| Max. P | 0.799504 |
| Location | 8,351,422 – 8,351,517 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 73.96 |
| Shannon entropy | 0.42754 |
| G+C content | 0.32979 |
| Mean single sequence MFE | -23.64 |
| Consensus MFE | -12.96 |
| Energy contribution | -14.65 |
| Covariance contribution | 1.69 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.799504 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8351422 95 + 27905053 UCAACUUAUAUUUAAAUCUGCAUCU-----------------GUGGGUUUAUCAGUAAGCAAGCAUUUAGCUCGUUUAUUAAGCCGCUAUAAUAAAAUAUUUCGUGGCUUAU ............((((((..(....-----------------)..))))))..(((((((.(((.....))).)))))))(((((((...((((...))))..))))))).. ( -23.80, z-score = -3.28, R) >droEre2.scaffold_4770 4445629 101 - 17746568 UCAAUUUAUUUUUAAACCUGCAUCUUCUGGCUGUGAAGCAAUGUGGAUUUAUCAGUGA----------AACU-AUUUAUUAAGCCGCAUUAAUUAAAUGUUUCAAGGCUUAU ....((((((..((((.(..(((((((.......))))..)))..).))))..)))))----------)...-......(((((((((((.....))))).....)))))). ( -20.20, z-score = -1.08, R) >droYak2.chr3R 12635989 112 + 28832112 UGGACAUAUUGUUAAAUCCGCAUCUUUUGGCUGUGAAGCGAUGUGGAUUUAUCAGCAAGCAAGCAUUACAAUCGUUUAUUAAGCCGCCAUAUUAAAAUAUUUCAGGGCUUAU (((((....((.((((((((((((.....(((....))))))))))))))).))((......)).........))))).((((((....................)))))). ( -27.85, z-score = -1.47, R) >droSim1.chr3R 14438879 112 - 27517382 UCAACAUACAUUUAAAUCUGCAUAUUCUGGCUGUGAAGCGAUGUGGGUUUAUCAAUAAGCAAUCAUUAAACUCGUUUAUUAAGCCGCCAUAAUAAAAUAUUUCGUGGCUUAU ............((((((..(((.(((.......)))...)))..))))))..(((((((.............)))))))(((((((...((((...))))..))))))).. ( -22.72, z-score = -1.29, R) >consensus UCAACAUAUAUUUAAAUCUGCAUCUUCUGGCUGUGAAGCGAUGUGGAUUUAUCAGUAAGCAAGCAUUAAACUCGUUUAUUAAGCCGCCAUAAUAAAAUAUUUCAUGGCUUAU ............(((((((((((......(((....))).)))))))))))............................((((((((...(((.....)))..)))))))). (-12.96 = -14.65 + 1.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:09:19 2011