| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,282,656 – 8,282,752 |
| Length | 96 |
| Max. P | 0.513071 |
| Location | 8,282,656 – 8,282,752 |
|---|---|
| Length | 96 |
| Sequences | 13 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 68.71 |
| Shannon entropy | 0.64076 |
| G+C content | 0.56718 |
| Mean single sequence MFE | -36.80 |
| Consensus MFE | -10.68 |
| Energy contribution | -10.68 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.29 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.513071 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8282656 96 + 27905053 CAGUUUGCUCUCAGAAUUCAAAGAGCUGGUGUUGUGUGCGCACUCAGCACCUGGAC------CACCAGUACGAGGUGAUCAGUGAGCAUUCGCCGAAGGCAA--------- ..(((((((((..(....)..)))))(((((....((((.((((...(((((.(((------.....)).).)))))...)))).)))).))))).))))..--------- ( -32.60, z-score = -1.06, R) >droSim1.chr3R 14410949 96 - 27517382 CCGCCUGCUCUCAGAAUUCAAAGAGCUGGUGUUGUGUUCGCACUCAGCACCUGGAC------CACCAAUACGAGGUGAUCAGUGAGCACUCGCCGAAGGCAA--------- ..(((((((((..(....)..)))))(((((..((((((((...(((...)))((.------((((.......)))).)).)))))))).))))).))))..--------- ( -37.70, z-score = -2.83, R) >droSec1.super_0 7455901 96 - 21120651 CCGCCUGCUCUCAGAAUUCAAUGAGCUGGUGUUGUGUUCGCACCCAGCACCUGGAC------CACCAAUACGAGGUGAUCAGUGAGCACUCGCCGAAGGCAA--------- ..((((((((............))))(((((..((((((((..((((...))))..------((((.......))))....)))))))).))))).))))..--------- ( -37.70, z-score = -2.92, R) >droYak2.chr3R 12606436 96 + 28832112 CCGCCUGCUCUCAGAAUUCCAAGAGCUGGUGCUGUGUGCGCACUCAGCACCUGGAC------CACCAGUUCGAGGUGAUCAGCGAGCAUUCGCCGAAGGCCA--------- ..(((((((((..(....)..)))))(((((..((((.(((......(((((((((------.....)))).)))))....))).)))).))))).))))..--------- ( -35.60, z-score = -0.94, R) >droEre2.scaffold_4770 4408503 96 - 17746568 CCGUCUGCUCUCAGAAUUCAAAGAGCUGGUGCUGUGUGCGCACUCAGCACCUGGAC------CACCAGUACGAGGUGAUCAGCGAGCACUCGCCGAAGGCCA--------- (((((((((((..(....)..))))).(((((((.((....)).))))))).))))------((((.......)))).((.((((....)))).)).))...--------- ( -35.80, z-score = -1.03, R) >droAna3.scaffold_13340 7664710 95 + 23697760 CCGCGUGCUCCCAGAAUCCGAGGAGCUGGCUGUGCGUUCGAACCCAGCACCUGGAC------CACCAGUUCGAGGUCAUAAGUGAGCAGUCGCCGAAGGCC---------- ..(((..(..((((..((....)).))))..)..)))((((((((((...))))..------.....))))))((((.(..((((....))))..).))))---------- ( -28.51, z-score = 0.58, R) >dp4.chr2 5511371 99 + 30794189 CCGCGUGCUCGCAAAACCCGAAGAGCUGGGUGUGUGUCCGCACACAGCACUUGGAC------AAUCAGUUUGAUGUGAUUUGUGAGCAAGCCAAGACAACGGCAG------ .....(((((((((((((((......)))))(((((....)))))..((((..(((------.....)))..).))).)))))))))).(((........)))..------ ( -37.30, z-score = -2.13, R) >droPer1.super_19 1227801 99 + 1869541 CCGCGUGCUCGCAAAACCCCAAGAGCUGGGUGUGUGUCCGCACACAGCACUUGGAC------AAUCAGUUUGAUGUGAUUUGUGAGCAAGCCAAGACAACGGCAG------ .....((((((((((...(((((.((((.(((((....))))).)))).)))))((------(.((.....)))))..)))))))))).(((........)))..------ ( -39.80, z-score = -2.94, R) >droWil1.scaffold_181089 2970212 102 - 12369635 CUGCGUGCUCGACCAAUCAGAAAAGCUGGGUAUGCGUGCGUACUCAGCAUCUGGACAUUGGUUCUCAAUACGAUGUGAUCAGUGAGCAGGUGCCUAAGGCUG--------- ..((.((((((.....(((((...((((((((((....)))))))))).)))))((((((..........))))))......)))))).))(((...)))..--------- ( -37.60, z-score = -2.06, R) >droGri2.scaffold_14906 10350351 96 - 14172833 CGGCCUGCUCGCCGAAUCAGAAGAGUUGGGUGUGUGUGCGCACCCAGCAUCUGGAC------AAUCAGUUUGAUGUCAUCAGUGAGCAGUCACCGAAGUUGG--------- (((.((((((((.((..((((...((((((((((....)))))))))).))))(((------(.((.....)))))).)).))))))))...))).......--------- ( -43.60, z-score = -4.28, R) >droMoj3.scaffold_6540 23781183 96 - 34148556 CGGCCUGCUCGCAAAAUCAGAAGAGUUGGGUGUGCGUGCGCACCCAGCAUCUCGAU------AAUCAGUUUGAUGUCAUAACCGAGCAAUCGCCCAAGUUGG--------- .(((.((((((........((.((((((((((((....)))))))))).))))(((------(.((.....)))))).....))))))...)))........--------- ( -35.70, z-score = -3.09, R) >droVir3.scaffold_12855 2845649 96 + 10161210 CAGCUUGUUCGCAGAACCAGAAGAGUUGGGUAUGCGUGCGCACUCAGCAUUUGGAU------AAUCAGUUUGAUGUCAUCAGCGAGCAGUCGCCCAAGUUGG--------- (((((((..(((....(((((...(((((((.((....)).))))))).)))))..------.....(((((.((....)).))))).).))..))))))).--------- ( -28.50, z-score = -0.76, R) >anoGam1.chr2R 13000085 111 + 62725911 CGCCCUGCUCGACCCAGUCCCAGGCGUGGACGUGCGUCCGGAUACAGUCGCUGGAGAAGGGCUCUCCCGGUGCGGACGGUGGCGUGACGGAGCUGCGAUCGGGCAAGGUAG .(((.(((((((.((((..((..((((.(.(((.(((((((....((((.((.....))))))...)))).))).))).).))))...))..))).).))))))).))).. ( -48.00, z-score = 0.38, R) >consensus CCGCCUGCUCGCAGAAUCCGAAGAGCUGGGUGUGUGUGCGCACUCAGCACCUGGAC______CAUCAGUUCGAGGUGAUCAGUGAGCAGUCGCCGAAGGCGG_________ .....(((((..............(((((...(((....))).)))))...(((..........)))................)))))....................... (-10.68 = -10.68 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:09:16 2011