| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,276,684 – 8,276,774 |
| Length | 90 |
| Max. P | 0.633812 |
| Location | 8,276,684 – 8,276,774 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 83.54 |
| Shannon entropy | 0.25728 |
| G+C content | 0.38693 |
| Mean single sequence MFE | -18.45 |
| Consensus MFE | -12.01 |
| Energy contribution | -12.58 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.633812 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8276684 90 - 27905053 UUUUCGC-------AUACCCGACAAUCCAGUUGGUUAAUGAAUCCCCAACUCACGAUCUGUGUUGGCAUUUCAUACAUGCAUAUAGUAUAAAAAUAG-- .....((-------((..(((((......)))))...(((((...(((((.((.....)).)))))...)))))..)))).................-- ( -20.20, z-score = -2.75, R) >droYak2.chr3R 12600261 88 - 28832112 UUUUCGCAUACCCGAUACCCGACAAUCCAGUUGGCUAAUGAAUCCCC-ACUCACGAACUACGUUCGCAUUUCAUAUA-GUAUAAAA-AUAG-------- .....((.....((.((.(((((......))))).)).)).......-......((((...))))))..........-........-....-------- ( -10.20, z-score = -0.59, R) >droSec1.super_0 7449883 92 + 21120651 UUUUCGC-------AUACCCGACAAUCCAGUUGGUUAUUGAAUCCCCAACUCACGAUCUGUGUUGGCAUUUCAUAUAUGCAUAUAGUAUAGAAAUGUAG .....((-------(((.(((((......)))))....((((...(((((.((.....)).)))))...))))..)))))......((((....)))). ( -21.70, z-score = -2.39, R) >droSim1.chr3R 14404498 92 + 27517382 UUUUCGC-------AUACCCGACAAUCCAGUUGGUUAUUGAAUCCCCAACUCACGAUCUGUGUUGGCAUUUCAUAUAUGCAUAUAGUAUAGAAAUGUAG .....((-------(((.(((((......)))))....((((...(((((.((.....)).)))))...))))..)))))......((((....)))). ( -21.70, z-score = -2.39, R) >consensus UUUUCGC_______AUACCCGACAAUCCAGUUGGUUAAUGAAUCCCCAACUCACGAUCUGUGUUGGCAUUUCAUAUAUGCAUAUAGUAUAGAAAUGU__ .....((...........(((((......)))))....((((...(((((.((.....)).)))))...)))).....))................... (-12.01 = -12.58 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:09:15 2011